RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ANKRD33BA6NCL7 494 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 DUXAA6NLW8 204 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 NPIPA5E9PKD4 350 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 ANGPT2O15123 496 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 KCNK2O95069 426 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 KRT75O95678 551 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 ATP6V1C1P21283 382 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 TRPC1P48995 793 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 CLK3P49761 638 aaKnown RBP16.56■□□□□ 0.24
CLN3-239ENST00000628023 PPIAP62937 165 aaKnown RBP16.56■□□□□ 0.24
CLN3-239ENST00000628023 EXOSC6Q5RKV6 272 aaKnown RBP16.56■□□□□ 0.24
CLN3-239ENST00000628023 DCST2Q5T1A1 773 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 CCNJQ5T5M9 372 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 ATAD3BQ5T9A4 648 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 SLC30A6Q6NXT4 461 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 C16orf62Q7Z3J2 963 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 RNF130Q86XS8 419 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 PNPT1Q8TCS8 783 aaKnown RBP16.56■□□□□ 0.24
CLN3-239ENST00000628023 SLX1AQ9BQ83 275 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 ANGPTL4Q9BY76 406 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 SERHL2Q9H4I8 314 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 IL1RL2Q9HB29 575 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 EXD2Q9NVH0 621 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 B4GALT7Q9UBV7 327 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 NPIPA1Q9UND3 350 aa16.56■□□□□ 0.24
CLN3-239ENST00000628023 DIDO1Q9BTC0 2240 aaKnown RBP16.55■□□□□ 0.24
CLN3-239ENST00000628023 CREBBPQ92793 2442 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 A0A1W2PP18 115 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 LRRTM2O43300 516 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 SCO2O43819 266 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 UTS2O95399 124 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 AGR2O95994 175 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 DRD4P21917 467 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 COL8A1P27658 744 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 EVI2BP34910 448 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 DCTP40126 519 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 SNTA1Q13424 505 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 GTDC1Q4AE62 458 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 TMEM81Q6P7N7 255 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 GTF2H4Q92759 462 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 GALNT9Q9HCQ5 603 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 ZFP64Q9NPA5 681 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 SAR1AQ9NR31 198 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 LEF1Q9UJU2 399 aaPredicted RBP16.55■□□□□ 0.24
CLN3-239ENST00000628023 NDUFAF1Q9Y375 327 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 EML6Q6ZMW3 1958 aa16.55■□□□□ 0.24
CLN3-239ENST00000628023 ZGRF1Q86YA3 2104 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 A0A096LPI6 279 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 A0A1B0GUH1 482 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 GNB5O14775 395 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 CDC40O60508 579 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLN3-239ENST00000628023 AK1P00568 194 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 IGKV1D-16P01601 117 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 SNRPB2P08579 225 aaKnown RBP16.54■□□□□ 0.24
CLN3-239ENST00000628023 ZCCHC18P0CG32 403 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 OR12D1P0DN82 309 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 HPGDP15428 266 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 MST1P26927 711 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 MAN2A2P49641 1150 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 HPCAP84074 193 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 MAPRE2Q15555 327 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLN3-239ENST00000628023 RNFT1Q5M7Z0 435 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 ZNF324BQ6AW86 544 aaPredicted RBP16.54■□□□□ 0.24
CLN3-239ENST00000628023 ZNF787Q6DD87 383 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 MIPOL1Q8TD10 442 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 XAGE5Q8WWM1 108 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 RAB8BQ92930 207 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 TMEM41AQ96HV5 264 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 TBL1XR1Q9BZK7 514 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 NMUR2Q9GZQ4 415 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 TPT1P8Q9HAU6 139 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 PROK2Q9HC23 129 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 SLC6A13Q9NSD5 602 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 FLRT3Q9NZU0 649 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 SEC14L3Q9UDX4 400 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 ABCG2Q9UNQ0 655 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 WIF1Q9Y5W5 379 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 KCNE3Q9Y6H6 103 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 CAPN7Q9Y6W3 813 aa16.54■□□□□ 0.24
CLN3-239ENST00000628023 ITPR2Q14571 2701 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 C2orf72A6NCS6 295 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 ASNA1O43681 348 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 CCDC22O60826 627 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 TRIM3O75382 744 aaPredicted RBP16.53■□□□□ 0.24
CLN3-239ENST00000628023 GLSO94925 669 aaPredicted RBP16.53■□□□□ 0.24
CLN3-239ENST00000628023 TXNL4AP83876 142 aaKnown RBP16.53■□□□□ 0.24
CLN3-239ENST00000628023 FOXO1Q12778 655 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 KLF10Q13118 480 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 STX5Q13190 355 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 GRAMD1BQ3KR37 738 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 PAGE3Q5JUK9 113 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 GFRALQ6UXV0 394 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 FAM109AQ8N4B1 249 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 TMEM251Q8N6I4 163 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 OR1J4Q8NGS1 313 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 ZFP90Q8TF47 636 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 AURKBQ96GD4 344 aaPredicted RBP16.53■□□□□ 0.24
CLN3-239ENST00000628023 GPR137Q96N19 417 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 PAIP1Q9H074 479 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms