RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GPR137Q96N19 417 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 G6PC3Q9BUM1 346 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 NSRP1Q9H0G5 558 aaKnown RBP15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 ABCG2Q9UNQ0 655 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 PCDHB14Q9Y5E9 798 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 A0A096LPI6 279 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 C2orf72A6NCS6 295 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 ADAM10O14672 748 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 ASNA1O43681 348 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 UTS2O95399 124 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 RFPL3SP0C7P2 107 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 OR12D1P0DN82 309 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 HOXB9P17482 250 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 MAGEA5P43359 124 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 MASP1P48740 699 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 KHKP50053 298 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 GAS1P54826 345 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 MRPL49Q13405 166 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 CMPK2Q5EBM0 449 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 LRIF1Q5T3J3 769 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 TIGD3Q6B0B8 471 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 BNC2Q6ZN30 1099 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 CPLX4Q7Z7G2 160 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 ZGRF1Q86YA3 2104 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 CHDHQ8NE62 594 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 OR4C3Q8NH37 302 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 PNPT1Q8TCS8 783 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 RAB8BQ92930 207 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 NMUR2Q9GZQ4 415 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 ZNF703Q9H7S9 590 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 ZDHHC11Q9H8X9 412 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 TPT1P8Q9HAU6 139 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 SLAMF8Q9P0V8 285 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 SEC14L3Q9UDX4 400 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 WIF1Q9Y5W5 379 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 FASNP49327 2511 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 ANKUB1A6NFN9 424 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 HMGN4O00479 90 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 SNX3O60493 162 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 UNC5CO95185 931 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 KRT75O95678 551 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 AGR2O95994 175 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 ELAVL4P26378 380 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 LCN1P31025 176 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 UQCRFS1P47985 274 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 MVDP53602 400 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 KLF10Q13118 480 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 GRAMD1BQ3KR37 738 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 COX20Q5RI15 118 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 HEPHL1Q6MZM0 1159 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 FAM109AQ8N4B1 249 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 XAGE5Q8WWM1 108 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 AURKBQ96GD4 344 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 GNRHR2Q96P88 292 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 SDF2Q99470 211 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 RTN4RQ9BZR6 473 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 EXD2Q9NVH0 621 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 SLC25A37Q9NYZ2 338 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 LEF1Q9UJU2 399 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 NDUFAF1Q9Y375 327 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 HRH3Q9Y5N1 445 aa15.12■□□□□ 0.01
CCDC28A-202ENST00000611852 POLEQ07864 2286 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 ESPL1Q14674 2120 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 GNB5O14775 395 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 SNPHO15079 494 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 SCO2O43819 266 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 AK1P00568 194 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 NGFRP08138 427 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 SNRPB2P08579 225 aaKnown RBP15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 CELA3AP09093 270 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 ATP6V1C1P21283 382 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 TBXA2RP21731 343 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 GNLYP22749 145 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 TXNL4AP83876 142 aaKnown RBP15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 ARHGAP11BQ3KRB8 267 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 GFRALQ6UXV0 394 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 APOOLQ6UXV4 268 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 RETREG3Q86VR2 466 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 MSRB3Q8IXL7 192 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 WDSUB1Q8N9V3 476 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 OR1J4Q8NGS1 313 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 DEFB127Q9H1M4 99 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 UBQLN3Q9H347 655 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 UBQLN4Q9NRR5 601 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 PLSCR2Q9NRY7 297 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 B4GALT7Q9UBV7 327 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 C15orf41Q9Y2V0 281 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 NCKAP5O14513 1909 aa15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 HELZ2Q9BYK8 2649 aaKnown RBP15.11■□□□□ 0.01
CCDC28A-202ENST00000611852 ZNF407Q9C0G0 2248 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 TRBV5-3A0A0A0MS03 114 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 C17orf51A8MQB3 221 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 ALG1L2C9J202 215 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 CLIC1O00299 241 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 ANGPT2O15123 496 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 OXSR1O95747 527 aaPredicted RBP15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 ADSLP30566 484 aaPredicted RBP15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 MAGEA8P43361 318 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms