RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ZNF551Q7Z340 670 aaPredicted RBP15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 ACMSDQ8TDX5 336 aa15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 PIK3IP1Q96FE7 263 aa15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 ZNF845Q96IR2 970 aaPredicted RBP15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 AMDHD1Q96NU7 426 aa15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 MED18Q9BUE0 208 aa15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 TBL1XR1Q9BZK7 514 aa15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 C12orf65Q9H3J6 166 aaKnown RBP15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 RRAGDQ9NQL2 400 aaPredicted RBP15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 NIPBLQ6KC79 2804 aaeCLIP15.87■□□□□ 0.13
SHKBP1-223ENST00000600552 A0A087WV62 115 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 OR2M5A3KFT3 312 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 G3V2L1 256 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 MSTNO14793 375 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 AKAP10O43572 662 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 HCRTR2O43614 444 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 UTS2O95399 124 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 OPN1LWP04000 364 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 POU2F1P14859 743 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 HOXB4P17483 251 aaPredicted RBP15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 CD53P19397 219 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 ADSLP30566 484 aaPredicted RBP15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 GSTM5P46439 218 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 CLDN20P56880 219 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 EEFSECP57772 596 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 BCL2A1Q16548 175 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 SGCBQ16585 318 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 EXOC3L2Q2M3D2 409 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 CLEC6AQ6EIG7 209 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 ZNF550Q7Z398 422 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 EXOC3L1Q86VI1 746 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 FADS6Q8N9I5 356 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 FBXO30Q8TB52 745 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 FNDC9Q8TBE3 224 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 GPR151Q8TDV0 419 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 PIK3R3Q92569 461 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 ELP4Q96EB1 424 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 CCDC126Q96EE4 140 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 EGLN2Q96KS0 407 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 PRRG4Q9BZD6 226 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 UBTD1Q9HAC8 227 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 TNFRSF12AQ9NP84 129 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 MYNNQ9NPC7 610 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 MRTO4Q9UKD2 239 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 GRID1Q9ULK0 1009 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 TESMINQ9Y4I5 508 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 PTGDR2Q9Y5Y4 395 aa15.86■□□□□ 0.13
SHKBP1-223ENST00000600552 GLRA3O75311 464 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 IL33O95760 270 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 CD79BP40259 229 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 KIR2DL2P43627 348 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 CLDN15P56746 228 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 PON3Q15166 354 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 ZNF474Q6S9Z5 364 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 P3H2Q8IVL5 708 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 CEP112Q8N8E3 955 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 ZNF610Q8N9Z0 462 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 GATSQ8NAP1 163 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 RNF138Q8WVD3 245 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 SLC9A6Q92581 669 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 CIDECQ96AQ7 238 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 C1GALT1C1Q96EU7 318 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 C11orf24Q96F05 449 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 SLC39A3Q9BRY0 314 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 KLHL4Q9C0H6 718 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 ZNF395Q9H8N7 513 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 DLL4Q9NR61 685 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 FAM120CQ9NX05 1096 aaKnown RBP15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 CLEC4AQ9UMR7 237 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 ABCG2Q9UNQ0 655 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 VDAC3Q9Y277 283 aa15.85■□□□□ 0.13
SHKBP1-223ENST00000600552 SERTM1A2A2V5 107 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 ANGPTL1O95841 491 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 PROCP04070 461 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 CRHP06850 196 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 FOSL1P15407 271 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 EFNA1P20827 205 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 PSMD4P55036 377 aaKnown RBP15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 RPS3AP61247 264 aaKnown RBP15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 GRAMD1BQ3KR37 738 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 FRMD7Q6ZUT3 714 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 OR2L13Q8N349 312 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 CLHC1Q8NHS4 586 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 UBLCP1Q8WVY7 318 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 PIGQQ9BRB3 760 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 C3orf14Q9HBI5 128 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 BEX4Q9NWD9 120 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 SIRT5Q9NXA8 310 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 ZNF226Q9NYT6 803 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 SH3BP4Q9P0V3 963 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 PROCRQ9UNN8 238 aa15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 ZNF469Q96JG9 3925 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-223ENST00000600552 EIF1AYO14602 144 aaKnown RBP15.83■□□□□ 0.12
SHKBP1-223ENST00000600552 PDPK1O15530 556 aa15.83■□□□□ 0.12
SHKBP1-223ENST00000600552 CTIFO43310 598 aaKnown RBP15.83■□□□□ 0.12
SHKBP1-223ENST00000600552 RSL1D1O76021 490 aaKnown RBP15.83■□□□□ 0.12
SHKBP1-223ENST00000600552 GOSR1O95249 250 aa15.83■□□□□ 0.12
SHKBP1-223ENST00000600552 KCNH1O95259 989 aa15.83■□□□□ 0.12
SHKBP1-223ENST00000600552 IGKV1D-16P01601 117 aa15.83■□□□□ 0.12
SHKBP1-223ENST00000600552 SHBGP04278 402 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms