RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ATP12AP54707 1039 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 SLC34A1Q06495 639 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 CHAF1BQ13112 559 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 EFR3AQ14156 821 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 FLYWCH1Q4VC44 716 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 ZNF311Q5JNZ3 666 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 WDR53Q7Z5U6 358 aaPredicted RBP14.11□□□□□ -0.15
SS18-215ENST00000580642 PQLC1Q8N2U9 271 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 ZNF527Q8NB42 609 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 OR52P1PQ8NH57 321 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 SLC22A8Q8TCC7 542 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 THAP4Q8WY91 577 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 NR4A3Q92570 626 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 OTUB1Q96FW1 271 aaPredicted RBP14.11□□□□□ -0.15
SS18-215ENST00000580642 HSH2DQ96JZ2 352 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 GAL3ST4Q96RP7 486 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 ZNF347Q96SE7 839 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 UBQLN4Q9NRR5 601 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 P4HTMQ9NXG6 502 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 MYOTQ9UBF9 498 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 STOML1Q9UBI4 398 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 SLC13A4Q9UKG4 626 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 WASF3Q9UPY6 502 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 SLC9A8Q9Y2E8 581 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 MSRB2Q9Y3D2 182 aa14.11□□□□□ -0.15
SS18-215ENST00000580642 SPEGQ15772 3267 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 TMEM229AB2RXF0 380 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 DEAF1O75398 565 aaPredicted RBP14.1□□□□□ -0.15
SS18-215ENST00000580642 NME6O75414 186 aaPredicted RBP14.1□□□□□ -0.15
SS18-215ENST00000580642 LGI1O95970 557 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 FESP07332 822 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 NID1P14543 1247 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 IL7RP16871 459 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 GCKP35557 465 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 ADH7P40394 386 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 NR0B1P51843 470 aaKnown RBP14.1□□□□□ -0.15
SS18-215ENST00000580642 RPS18P62269 152 aaKnown RBP14.1□□□□□ -0.15
SS18-215ENST00000580642 KCNJ10P78508 379 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 PLCXD2Q0VAA5 305 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 RPS26P11Q5JNZ5 115 aaPredicted RBP14.1□□□□□ -0.15
SS18-215ENST00000580642 H3F3CQ6NXT2 135 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 FIGNL1Q6PIW4 674 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 ENPP6Q6UWR7 440 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 ERMP1Q7Z2K6 904 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 MARCH9Q86YJ5 346 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 GRAMD2AQ8IUY3 354 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 SLC5A8Q8N695 610 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 TTC9Q92623 222 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 C7orf34Q96L11 122 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 SEPHS2Q99611 448 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 POLR2J2Q9GZM3 115 aaKnown RBP14.1□□□□□ -0.15
SS18-215ENST00000580642 POLR2J3Q9H1A7 115 aaKnown RBP14.1□□□□□ -0.15
SS18-215ENST00000580642 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.1□□□□□ -0.15
SS18-215ENST00000580642 FBXL4Q9UKA2 621 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 MKLN1Q9UL63 735 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 SCN2AQ99250 2005 aa14.1□□□□□ -0.15
SS18-215ENST00000580642 A0A1W2PQD3 144 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 TSPAN2O60636 221 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 UGT2B17O75795 530 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 ZIC2O95409 532 aaPredicted RBP14.09□□□□□ -0.15
SS18-215ENST00000580642 LDLRP01130 860 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 IFNW1P05000 195 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 FABP3P05413 133 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 TBXA2RP21731 343 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 ABCD3P28288 659 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 IL12BP29460 328 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 FOXC1Q12948 553 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 AIMP2Q13155 320 aaKnown RBP14.09□□□□□ -0.15
SS18-215ENST00000580642 GPR68Q15743 365 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 ATP6AP1Q15904 470 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 SNCBQ16143 134 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 DUSP7Q16829 419 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 CCNJQ5T5M9 372 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 NUP54Q7Z3B4 507 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 OR4N2Q8NGD1 307 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 APOBEC4Q8WW27 367 aaKnown RBP14.09□□□□□ -0.15
SS18-215ENST00000580642 TMBIM1Q969X1 311 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 CENPNQ96H22 339 aaPredicted RBP14.09□□□□□ -0.15
SS18-215ENST00000580642 TPD52L3Q96J77 140 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 BDH2Q9BUT1 245 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 DPH1Q9BZG8 443 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 ZNF160Q9HCG1 818 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 C8orf4Q9NR00 106 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 AGPAT4Q9NRZ5 378 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 DNAJB9Q9UBS3 223 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 DKK4Q9UBT3 224 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 ABCG2Q9UNQ0 655 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 ZNF443Q9Y2A4 671 aaPredicted RBP14.09□□□□□ -0.15
SS18-215ENST00000580642 YARS2Q9Y2Z4 477 aaKnown RBP14.09□□□□□ -0.15
SS18-215ENST00000580642 NPFFR2Q9Y5X5 522 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 AHCTF1Q8WYP5 2266 aa14.09□□□□□ -0.15
SS18-215ENST00000580642 TMEM200CA6NKL6 621 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 H3BNH8 94 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 PPM1BO75688 479 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 PRSS23O95084 383 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 IGKV1D-16P01601 117 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 CAPNS1P04632 268 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 LIFP15018 202 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 DCTP40126 519 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 RRADP55042 308 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms