RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PRIM2P49643 509 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 CLK3P49761 638 aaKnown RBP21.73■■□□□ 1.07
SHMT1-206ENST00000579558 CLDN8P56748 225 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 STX5Q13190 355 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 CASP8Q14790 479 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 LSM12Q3MHD2 195 aaKnown RBP21.73■■□□□ 1.07
SHMT1-206ENST00000579558 ACSF3Q4G176 576 aaPredicted RBP21.73■■□□□ 1.07
SHMT1-206ENST00000579558 ZCCHC12Q6PEW1 402 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 IFNEQ86WN2 208 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 SLC16A11Q8NCK7 471 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 YIPF4Q9BSR8 244 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 DUSP26Q9BV47 211 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 UCK2Q9BZX2 261 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 BHLHE41Q9C0J9 482 aaPredicted RBP21.73■■□□□ 1.07
SHMT1-206ENST00000579558 SDHAF3Q9NRP4 125 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 Q9UFV3 132 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 NKX2-6A6NCS4 301 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 ALOX5P09917 674 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 SLC18A1P54219 525 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 DIO3P55073 304 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 C21orf58P58505 322 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 DUSP5Q16690 384 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 PGS1Q32NB8 556 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 RIPPLY2Q5TAB7 128 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 JADE3Q92613 823 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 OTUB1Q96FW1 271 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-206ENST00000579558 C16orf58Q96GQ5 468 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 WDYHV1Q96HA8 205 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 KCNJ16Q9NPI9 418 aa21.72■■□□□ 1.07
SHMT1-206ENST00000579558 ITPR2Q14571 2701 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 B4DXG7 233 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 CFLARO15519 480 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 EPPINO95925 133 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 PRF1P14222 555 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 TCEA1P23193 301 aaKnown RBP21.71■■□□□ 1.07
SHMT1-206ENST00000579558 DPP4P27487 766 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 LASP1Q14847 261 aaKnown RBP21.71■■□□□ 1.07
SHMT1-206ENST00000579558 SF3B4Q15427 424 aaKnown RBP eCLIP21.71■■□□□ 1.07
SHMT1-206ENST00000579558 GRAMD1BQ3KR37 738 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 SPDYE7PQ495Y7 208 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 CAMKMTQ7Z624 323 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 GALNT10Q86SR1 603 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 MARCH3Q86UD3 253 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 LURAP1LQ8IV03 231 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 MCEMP1Q8IX19 187 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 COX18Q8N8Q8 333 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 PSMA8Q8TAA3 256 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 CHMP6Q96FZ7 201 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 TBL1XR1Q9BZK7 514 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 RTN4RQ9BZR6 473 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 DSN1Q9H410 356 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 CXorf36Q9H7Y0 433 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 MEAF6Q9HAF1 191 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 NEUROD4Q9HD90 331 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 THAP1Q9NVV9 213 aa21.71■■□□□ 1.07
SHMT1-206ENST00000579558 MED12Q93074 2177 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 HMGN2P05204 90 aaKnown RBP21.7■■□□□ 1.06
SHMT1-206ENST00000579558 LBPP18428 481 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 CCT3P49368 545 aaKnown RBP21.7■■□□□ 1.06
SHMT1-206ENST00000579558 DSCR4P56555 118 aaPredicted RBP21.7■■□□□ 1.06
SHMT1-206ENST00000579558 TP53BP2Q13625 1128 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 FIGNL1Q6PIW4 674 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 ENPP6Q6UWR7 440 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 SEM1Q6ZVN7 128 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 LACC1Q8IV20 430 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 TRIM42Q8IWZ5 723 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 FADS6Q8N9I5 356 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 OR2M3Q8NG83 312 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 OR56A1Q8NGH5 318 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 SFXN2Q96NB2 322 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 DPY30Q9C005 99 aa21.7■■□□□ 1.06
SHMT1-206ENST00000579558 RPH3AQ9Y2J0 694 aaPredicted RBP21.7■■□□□ 1.06
SHMT1-206ENST00000579558 MRPS18CQ9Y3D5 142 aaKnown RBP21.7■■□□□ 1.06
SHMT1-206ENST00000579558 KDM4EB2RXH2 506 aaPredicted RBP21.69■■□□□ 1.06
SHMT1-206ENST00000579558 TOXO94900 526 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 KCNK2O95069 426 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 GFRA1P56159 465 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 WNT3P56703 355 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 EXOSC6Q5RKV6 272 aaKnown RBP21.69■■□□□ 1.06
SHMT1-206ENST00000579558 ATG16L1Q676U5 607 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 AAGABQ6PD74 315 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 LRRC34Q8IZ02 419 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 RAB3IL1Q8TBN0 382 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 FAM110BQ8TC76 370 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 SFXN5Q8TD22 340 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 DUSP19Q8WTR2 217 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 TRIB1Q96RU8 372 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 MED11Q9P086 117 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 PKDREJQ9NTG1 2253 aa21.69■■□□□ 1.06
SHMT1-206ENST00000579558 HSPB2A8KAH6 182 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 ZIC3O60481 467 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 SNNO75324 88 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-206ENST00000579558 CPN1P15169 458 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 SOAT1P35610 550 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 POU6F2P78424 691 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-206ENST00000579558 TFF3Q07654 80 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 RCAN2Q14206 197 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 HSPB2Q16082 182 aa21.68■■□□□ 1.06
SHMT1-206ENST00000579558 CPEB4Q17RY0 729 aaKnown RBP eCLIP21.68■■□□□ 1.06
SHMT1-206ENST00000579558 AGBL2Q5U5Z8 902 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms