RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 L3HYPDHQ96EM0 354 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 ZNF845Q96IR2 970 aaPredicted RBP18.98■□□□□ 0.63
VPS53-216ENST00000574029 RHOXF2Q9BQY4 288 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 PINK1Q9BXM7 581 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 GRID1Q9ULK0 1009 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 C19orf53Q9UNZ5 99 aaPredicted RBP18.98■□□□□ 0.63
VPS53-216ENST00000574029 TIMM22Q9Y584 194 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 OR2M5A3KFT3 312 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 C16orf97H3BN30 126 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 PSMG1O95456 288 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 LY6G6DO95868 133 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 JUNP05412 331 aaKnown RBP18.97■□□□□ 0.63
VPS53-216ENST00000574029 GCAP28676 217 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 NCBP2P52298 156 aaKnown RBP eCLIP18.97■□□□□ 0.63
VPS53-216ENST00000574029 PRKAA2P54646 552 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 OCRLQ01968 901 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 BTKQ06187 659 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 C2orf80Q0P641 193 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 FGFBP1Q14512 234 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 GUSBP1Q15486 140 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 GLYR1Q49A26 553 aaPredicted RBP18.97■□□□□ 0.63
VPS53-216ENST00000574029 SH2D4BQ5SQS7 431 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 SLC22A9Q8IVM8 553 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 CIARTQ8N365 385 aaPredicted RBP18.97■□□□□ 0.63
VPS53-216ENST00000574029 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.97■□□□□ 0.63
VPS53-216ENST00000574029 FNDC9Q8TBE3 224 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 C1GALT1C1Q96EU7 318 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 KCNA7Q96RP8 456 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 PTGES2Q9H7Z7 377 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 FAM120CQ9NX05 1096 aaKnown RBP18.97■□□□□ 0.63
VPS53-216ENST00000574029 TAS2R7Q9NYW3 318 aa18.97■□□□□ 0.63
VPS53-216ENST00000574029 EXOC1LA0A1B0GW35 172 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 CCDC151A5D8V7 595 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 UPK1AO00322 258 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 SEC14L5O43304 696 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 IL33O95760 270 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 LOXP28300 417 aaPredicted RBP18.96■□□□□ 0.63
VPS53-216ENST00000574029 CLDN20P56880 219 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 ZNF763Q0D2J5 394 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 STX5Q13190 355 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 PON3Q15166 354 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 DECR1Q16698 335 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 TMEM107Q6UX40 140 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 ZNF550Q7Z398 422 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 OR2L13Q8N349 312 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 METTL25Q8N6Q8 603 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 ZNF610Q8N9Z0 462 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 OR5M1Q8NGP8 315 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 DUSP19Q8WTR2 217 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 Q96MF0 132 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 HS3ST6Q96QI5 342 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 CCL19Q99731 98 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 PIGQQ9BRB3 760 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 UBTD1Q9HAC8 227 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 Q9N2J8 555 aa18.96■□□□□ 0.63
VPS53-216ENST00000574029 H3BML4 177 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 H7C1Q1 480 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 FAM71E1Q6IPT2 247 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 C20orf204Q6ZNR8 217 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 C22orf34Q6ZV56 151 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 MARCH3Q86UD3 253 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 PPP1R14CQ8TAE6 165 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 LMF2Q9BU23 707 aaKnown RBP18.95■□□□□ 0.62
VPS53-216ENST00000574029 GLIPR2Q9H4G4 154 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 GSTO2Q9H4Y5 243 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 MRTO4Q9UKD2 239 aaKnown RBP18.95■□□□□ 0.62
VPS53-216ENST00000574029 PROCRQ9UNN8 238 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 AP4B1Q9Y6B7 739 aa18.95■□□□□ 0.62
VPS53-216ENST00000574029 NSD1Q96L73 2696 aaPredicted RBP18.95■□□□□ 0.62
VPS53-216ENST00000574029 IGLV3-32A0A0A0MS00 114 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 KCNJ5P48544 419 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 CLK3P49761 638 aaKnown RBP18.94■□□□□ 0.62
VPS53-216ENST00000574029 FOXA1P55317 472 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 RPS3AP61247 264 aaKnown RBP18.94■□□□□ 0.62
VPS53-216ENST00000574029 TMEM44Q2T9K0 475 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 SPDYAQ5MJ70 313 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 YTHDF3Q7Z739 585 aaKnown RBP18.94■□□□□ 0.62
VPS53-216ENST00000574029 CAVIN3Q969G5 261 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 ELP4Q96EB1 424 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 BDH2Q9BUT1 245 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 MYNNQ9NPC7 610 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 MIEF1Q9NQG6 463 aa18.94■□□□□ 0.62
VPS53-216ENST00000574029 DDX18Q9NVP1 670 aaKnown RBP18.94■□□□□ 0.62
VPS53-216ENST00000574029 UBFD1O14562 309 aaKnown RBP18.93■□□□□ 0.62
VPS53-216ENST00000574029 AQP8O94778 261 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 ABHD2P08910 425 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 IFI6P09912 130 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 TBXA2RP21731 343 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 PSMD4P55036 377 aaKnown RBP18.93■□□□□ 0.62
VPS53-216ENST00000574029 C17orf67Q0P5P2 114 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 ZNHIT3Q15649 155 aaPredicted RBP18.93■□□□□ 0.62
VPS53-216ENST00000574029 TRMT10CQ7L0Y3 403 aaKnown RBP18.93■□□□□ 0.62
VPS53-216ENST00000574029 FAM214BQ7L5A3 538 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 GGNQ86UU5 652 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 CDC26Q8NHZ8 85 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 FAM76AQ8TAV0 307 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 GFM2Q969S9 779 aaKnown RBP18.93■□□□□ 0.62
VPS53-216ENST00000574029 ZC3HAV1LQ96H79 300 aaKnown RBP18.93■□□□□ 0.62
VPS53-216ENST00000574029 AMDHD1Q96NU7 426 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 TXLNGYQ9BZA5 131 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms