RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RNF215Q9Y6U7 377 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 CCDC163A0A0D9SF12 145 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 IQCMA0A1B0GVH7 501 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 TMEM189-UBE2V1I3L0A0 370 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 LATS1O95835 1130 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 C1RP00736 705 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 TFP02787 698 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 LINC00032P0C843 101 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 OR8G3PP0DMU2 310 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 KIR3DL2P43630 455 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 DAPP51397 102 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 CDK6Q00534 326 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 GINS1Q14691 196 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 RBBP7Q16576 425 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 NTRK2Q16620 822 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 DUOXA1Q1HG43 343 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 NDUFAF6Q330K2 333 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 PCID2Q5JVF3 399 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 ACSM5Q6NUN0 579 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 THOC6Q86W42 341 aaKnown RBP10.2□□□□□ -0.78
CLK3-226ENST00000569406 ARRDC2Q8TBH0 407 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 GPBAR1Q8TDU6 330 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 APH1BQ8WW43 257 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 IMP4Q96G21 291 aaKnown RBP10.2□□□□□ -0.78
CLK3-226ENST00000569406 OR2M2Q96R28 347 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 RAD18Q9NS91 495 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 C2orf42Q9NWW7 574 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 PDP1Q9P0J1 537 aaPredicted RBP10.2□□□□□ -0.78
CLK3-226ENST00000569406 DUXAA6NLW8 204 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 MID1O15344 667 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 HPP00738 406 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 OR4E1P0C645 316 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 HGFP14210 728 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 CCR1P32246 355 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 STARD6P59095 220 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 SLC10A7Q0GE19 358 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 FOXO1Q12778 655 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 SLC14A2Q15849 920 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 SSX1Q16384 188 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 LARP4Q71RC2 724 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLK3-226ENST00000569406 PDZD3Q86UT5 571 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 MISPQ8IVT2 679 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 STOML3Q8TAV4 291 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 TM9SF4Q92544 642 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 PHYHIPQ92561 330 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 ESAMQ96AP7 390 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 CPNE2Q96FN4 548 aaPredicted RBP10.2□□□□□ -0.78
CLK3-226ENST00000569406 ZNF599Q96NL3 588 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 OCSTAMPQ9BR26 566 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 NLNQ9BYT8 704 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 ACSS1Q9NUB1 689 aaPredicted RBP10.2□□□□□ -0.78
CLK3-226ENST00000569406 FAM50BQ9Y247 325 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 ANKRD36A6QL64 1941 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 ANAPC1Q9H1A4 1944 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 PRAMEF2O60811 474 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 YIF1AO95070 293 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 UGT2B7P16662 529 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 S100A11P31949 105 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 SDC2P34741 201 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 OR2B8PP59922 312 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLK3-226ENST00000569406 PWP1Q13610 501 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 SCGB2B2Q4G0G5 96 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 SYTL3Q4VX76 610 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 RNASE12Q5GAN4 147 aaKnown RBP10.2□□□□□ -0.78
CLK3-226ENST00000569406 SYT14Q8NB59 555 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 GAL3ST3Q96A11 431 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 HMCESQ96FZ2 354 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 MAPKAP1Q9BPZ7 522 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 POLDIP3Q9BY77 421 aaKnown RBP10.2□□□□□ -0.78
CLK3-226ENST00000569406 TSPAN10Q9H1Z9 355 aaPredicted RBP10.2□□□□□ -0.78
CLK3-226ENST00000569406 BCO1Q9HAY6 547 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 IL17BQ9UHF5 180 aa10.2□□□□□ -0.78
CLK3-226ENST00000569406 USP34Q70CQ2 3546 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 M0R129 80 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 FGF10O15520 208 aaPredicted RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 EFEMP2O95967 443 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 HLA-DPA1P20036 260 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 AVPR1BP47901 424 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 DIO3P55073 304 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 FOXM1Q08050 763 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 ST3GAL2Q16842 350 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 GSG1LQ6UXU4 331 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 TMEM173Q86WV6 379 aaPredicted RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 OR5M9Q8NGP3 310 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 RFKQ969G6 155 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 RFT1Q96AA3 541 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 KCNC2Q96PR1 638 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 SIGLEC11Q96RL6 698 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 GINS4Q9BRT9 223 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 THUMPD3Q9BV44 507 aaKnown RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 PRR14Q9BWN1 585 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 PRDM7Q9NQW5 492 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 H2AFY2Q9P0M6 372 aaPredicted RBP10.19□□□□□ -0.78
CLK3-226ENST00000569406 LRRC14BA6NHZ5 514 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 OR2AT4A6NND4 320 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 A8MXE2 369 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 HSBP1L1C9JCN9 74 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 AOC2O75106 756 aa10.19□□□□□ -0.78
CLK3-226ENST00000569406 IGF2P01344 180 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms