RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 RIMKLAQ8IXN7 391 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 KIRREL3Q8IZU9 778 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 TNIP2Q8NFZ5 429 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 PIK3R3Q92569 461 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 ZBTB9Q96C00 473 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 SORT1Q99523 831 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 PRPF18Q99633 342 aaKnown RBP18.43■□□□□ 0.54
CLK3-225ENST00000569063 SIRT3Q9NTG7 399 aaPredicted RBP18.43■□□□□ 0.54
CLK3-225ENST00000569063 ASIC5Q9NY37 505 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 HAO1Q9UJM8 370 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 FBN2P35556 2912 aa18.43■□□□□ 0.54
CLK3-225ENST00000569063 HCFC1P51610 2035 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 IGKV1D-16P01601 117 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 ACP2P11117 423 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 G6PDP11413 515 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 EFNA1P20827 205 aaPredicted RBP18.42■□□□□ 0.54
CLK3-225ENST00000569063 CHMP24386 653 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 DPP4P27487 766 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 RPL14P50914 215 aaKnown RBP18.42■□□□□ 0.54
CLK3-225ENST00000569063 DSCR4P56555 118 aaPredicted RBP18.42■□□□□ 0.54
CLK3-225ENST00000569063 PRR5P85299 388 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 EXOSC6Q5RKV6 272 aaKnown RBP18.42■□□□□ 0.54
CLK3-225ENST00000569063 MFSD12Q6NUT3 480 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 AAGABQ6PD74 315 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 DMRTC2Q8IXT2 367 aaPredicted RBP18.42■□□□□ 0.54
CLK3-225ENST00000569063 SLC16A11Q8NCK7 471 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 NAXEQ8NCW5 288 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 OR2M3Q8NG83 312 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 OR4K17Q8NGC6 315 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 PSMA8Q8TAA3 256 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 FAM110BQ8TC76 370 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 SLC9A6Q92581 669 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 FAM120BQ96EK7 910 aaKnown RBP18.42■□□□□ 0.54
CLK3-225ENST00000569063 RMND5BQ96G75 393 aaPredicted RBP18.42■□□□□ 0.54
CLK3-225ENST00000569063 RTN4RQ9BZR6 473 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 DSN1Q9H410 356 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 NOP53Q9NZM5 478 aaKnown RBP18.42■□□□□ 0.54
CLK3-225ENST00000569063 DKKL1Q9UK85 242 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 ARHGAP21Q5T5U3 1957 aa18.42■□□□□ 0.54
CLK3-225ENST00000569063 MBD3L4A6NDZ8 208 aaPredicted RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 MBD3L3A6NE82 208 aaPredicted RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 MBD3L5A6NJ08 208 aaPredicted RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 C17orf51A8MQB3 221 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 UTS2O95399 124 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 IL2RAP01589 272 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 BGNP21810 368 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 RFX3P48380 749 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 LHX2P50458 406 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 WNT3P56703 355 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 STX3Q13277 289 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 RCAN2Q14206 197 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 GANABQ14697 944 aaKnown RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 PDCD2Q16342 344 aaPredicted RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 SZRD1Q7Z422 152 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 KRTCAP2Q8N6L1 136 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 MBD3L2Q8NHZ7 208 aaPredicted RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 OR5P2Q8WZ92 322 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 C16orf58Q96GQ5 468 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 TRIB1Q96RU8 372 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 BHLHE41Q9C0J9 482 aaPredicted RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 AKTIPQ9H8T0 292 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 ZCCHC3Q9NUD5 404 aaKnown RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 GIN1Q9NXP7 522 aa18.41■□□□□ 0.54
CLK3-225ENST00000569063 ZNF629Q9UEG4 869 aaPredicted RBP18.41■□□□□ 0.54
CLK3-225ENST00000569063 IGLV3-32A0A0A0MS00 114 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 DVL2O14641 736 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 ERLIN1O75477 346 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 NGFRP08138 427 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 ALOX5P09917 674 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 PRIM2P49643 509 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 DIO3P55073 304 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 CLDN8P56748 225 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 C17orf67Q0P5P2 114 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 DUSP5Q16690 384 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.4■□□□□ 0.54
CLK3-225ENST00000569063 GRAMD1BQ3KR37 738 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 LSM12Q3MHD2 195 aaKnown RBP18.4■□□□□ 0.54
CLK3-225ENST00000569063 POMZP3Q6PJE2 187 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 APOOLQ6UXV4 268 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 CAMKMTQ7Z624 323 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 ADGRE4PQ86SQ3 457 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 MARCH3Q86UD3 253 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 DUSP19Q8WTR2 217 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 NUDT8Q8WV74 236 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 SFXN2Q96NB2 322 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 UCN2Q96RP3 112 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 TUBA1CQ9BQE3 449 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 TBL1XR1Q9BZK7 514 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 MED11Q9P086 117 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 APCP25054 2843 aa18.4■□□□□ 0.54
CLK3-225ENST00000569063 DCHS2Q6V1P9 2916 aa18.39■□□□□ 0.54
CLK3-225ENST00000569063 KCNK2O95069 426 aa18.39■□□□□ 0.53
CLK3-225ENST00000569063 ANGPTL1O95841 491 aa18.39■□□□□ 0.53
CLK3-225ENST00000569063 HMGN2P05204 90 aaKnown RBP18.39■□□□□ 0.53
CLK3-225ENST00000569063 LCN1P31025 176 aa18.39■□□□□ 0.53
CLK3-225ENST00000569063 STARP49675 285 aa18.39■□□□□ 0.53
CLK3-225ENST00000569063 SLC18A1P54219 525 aa18.39■□□□□ 0.53
CLK3-225ENST00000569063 B3GALT5-AS1P59052 145 aa18.39■□□□□ 0.53
CLK3-225ENST00000569063 STX5Q13190 355 aa18.39■□□□□ 0.53
CLK3-225ENST00000569063 BCL2A1Q16548 175 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms