RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ZC3HAV1LQ96H79 300 aaKnown RBP12.41□□□□□ -0.42
VPS4A-204ENST00000566354 SLC35G5Q96KT7 338 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 OR52A5Q9H2C5 316 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 OR51I1Q9H343 314 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 SYNDIG1Q9H7V2 258 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 KLHL21Q9UJP4 597 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 YARS2Q9Y2Z4 477 aaKnown RBP12.41□□□□□ -0.42
VPS4A-204ENST00000566354 SPEF1Q9Y4P9 236 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 MAU2Q9Y6X3 613 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 GON4LQ3T8J9 2241 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 A0A0B4J293 547 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TEX51A0A1B0GUA7 166 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 A0A1W2PQU0 124 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 FAM170BA6NMN3 283 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 GPR37O15354 613 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PROM1O43490 865 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TRIM3O75382 744 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 MAT2AP31153 395 aaKnown RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 S100A12P80511 92 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 DPTQ07507 201 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 WSCD2Q2TBF2 565 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 MINDY4Q4G0A6 757 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 MZT2BQ6NZ67 158 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 SLC27A4Q6P1M0 643 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 MRGPREQ86SM8 312 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 LIX1LQ8IVB5 337 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 DCUN1D3Q8IWE4 304 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TCTE3Q8IZS6 198 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 OR5AR1Q8NGP9 310 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 BBS10Q8TAM1 723 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 RNF31Q96EP0 1072 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PRRC1Q96M27 445 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 GPA33Q99795 319 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TM9SF2Q99805 663 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 SOSTQ9BQB4 213 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 ARHGAP9Q9BRR9 750 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 BCL2L10Q9HD36 194 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 MBNL1Q9NR56 388 aaKnown RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 STMN3Q9NZ72 180 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TAC3Q9UHF0 121 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PLAGL1Q9UM63 463 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PCDHGB7Q9Y5F8 929 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 NCOR1O75376 2440 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3DA0A087WVF3 549 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3IA0A087WXS9 549 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3EA0A087X179 549 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3KA0A087X1G2 549 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TRDV1A0A1B0GX56 115 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3FA6NER0 549 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3LB9A6J9 549 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PCCBP05166 539 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3HP0C7X1 549 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 SLC2A2P11168 524 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PTBP1P26599 531 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 ERP29P30040 261 aaKnown RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 ACSL1P33121 698 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 MAP2K3P46734 347 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TPMTP51580 245 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 STARD6P59095 220 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 SRP54P61011 504 aaKnown RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PPP2CBP62714 309 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PPP2CAP67775 309 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 CD83Q01151 205 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 ARHGAP19Q14CB8 494 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 GPR19Q15760 415 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TRIQKQ629K1 86 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TIGD3Q6B0B8 471 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3GQ6DHY5 549 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3CQ6IPX1 549 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 FAM83HQ6ZRV2 1179 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TRIM48Q8IWZ4 208 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D3Q8IZP1 549 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 OR5D16Q8NGK9 328 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 OR6T1Q8NGN1 323 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TEX47Q8TBZ9 253 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 SLC9A6Q92581 669 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 RGMAQ96B86 450 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 SLC38A2Q96QD8 506 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 COQ7Q99807 217 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 GON7Q9BXV9 100 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 PPP1R3EQ9H7J1 279 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 LHX9Q9NQ69 397 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 WASH6PQ9NQA3 447 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 RBFOX1Q9NWB1 397 aaKnown RBP12.4□□□□□ -0.42
VPS4A-204ENST00000566354 COMMD3Q9UBI1 195 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 TRPC4Q9UBN4 977 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 ADAM29Q9UKF5 820 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 SCML1Q9UN30 329 aa12.4□□□□□ -0.42
VPS4A-204ENST00000566354 POM121CA8CG34 1229 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 VEGFDO43915 354 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 TMPRSS11DO60235 418 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 RNGTTO60942 597 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 GAAP10253 952 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 SSTR4P31391 388 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 IFNGR2P38484 337 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 CCR8P51685 355 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 FABP5Q01469 135 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 SZRD1Q7Z422 152 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 UBE2J2Q8N2K1 259 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 Q8N402 240 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms