RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ASCL1P50553 236 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 POMZP3Q6PJE2 187 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 CHMP1BQ7LBR1 199 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 TMEM200AQ86VY9 491 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 CDRT4Q8N9R6 151 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 C9orf106Q8NAJ2 232 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 OR2M3Q8NG83 312 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 RMND5BQ96G75 393 aaPredicted RBP18.8■□□□□ 0.6
CLN3-219ENST00000565778 C3orf30Q96M34 536 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 TBL1XR1Q9BZK7 514 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 PTGES2Q9H7Z7 377 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 FAM120CQ9NX05 1096 aaKnown RBP18.8■□□□□ 0.6
CLN3-219ENST00000565778 L3MBTL1Q9Y468 752 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 INTS1Q8N201 2190 aaKnown RBP18.8■□□□□ 0.6
CLN3-219ENST00000565778 PDZD2O15018 2839 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 B4DXG7 233 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 TMIGD3P0DMS9 266 aaPredicted RBP18.79■□□□□ 0.6
CLN3-219ENST00000565778 HK1P19367 917 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 ARRB2P32121 409 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 HPCAL1P37235 193 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 RPL3P39023 403 aaKnown RBP18.79■□□□□ 0.6
CLN3-219ENST00000565778 C6orf136Q5SQH8 315 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 FADS6Q8N9I5 356 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 FNDC5Q8NAU1 212 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 OR7A2PQ8NGA2 310 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 RNASE6Q93091 150 aaKnown RBP18.79■□□□□ 0.6
CLN3-219ENST00000565778 TM9SF2Q99805 663 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 C1orf50Q9BV19 199 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 RTN4RQ9BZR6 473 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 CENPHQ9H3R5 247 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 NTMQ9P121 344 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 ATP6V1HQ9UI12 483 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 ARHGAP21Q5T5U3 1957 aa18.79■□□□□ 0.6
CLN3-219ENST00000565778 A0A1W2PRB8 838 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 CLCA1A8K7I4 914 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 NKX2-2O95096 273 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 IGKV1D-16P01601 117 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 PEX19P40855 299 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 ETV4P43268 484 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 ZNF844Q08AG5 666 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 C17orf67Q0P5P2 114 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 BCL2A1Q16548 175 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 XKR7Q5GH72 579 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 IL23RQ5VWK5 629 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 PLXDC2Q6UX71 529 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 CDH24Q86UP0 819 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 ZZZ3Q8IYH5 903 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 OR6Y1Q8NGX8 325 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 FBXO30Q8TB52 745 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 WNT2BQ93097 391 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 TUBGCP3Q96CW5 907 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 SH3GL2Q99962 352 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 YIPF4Q9BSR8 244 aa18.78■□□□□ 0.6
CLN3-219ENST00000565778 FOXD3Q9UJU5 478 aaPredicted RBP18.78■□□□□ 0.6
CLN3-219ENST00000565778 TACC2O95359 2948 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 CSMD1Q96PZ7 3565 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 EEF1E1-BLOC1S5C9J1V9 151 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 SCAMP2O15127 329 aaKnown RBP18.77■□□□□ 0.6
CLN3-219ENST00000565778 EEF1E1O43324 174 aaKnown RBP18.77■□□□□ 0.6
CLN3-219ENST00000565778 GMFGO60234 142 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 RCBTB2O95199 551 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 HSPA4LO95757 839 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 ANGPTL1O95841 491 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 IL18BPO95998 194 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 ALOX5P09917 674 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 ACP2P11117 423 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 LAMP1P11279 417 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 PEPDP12955 493 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 ZNF708P17019 499 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 MAP3K8P41279 467 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 SERPINB4P48594 390 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 PRR5P85299 388 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 GRAMD1BQ3KR37 738 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 FBXL19-AS1Q494R0 122 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 CPTPQ5TA50 214 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 RAET1LQ5VY80 246 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 ZCCHC12Q6PEW1 402 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 GALNT10Q86SR1 603 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 UBQLNLQ8IYU4 475 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 SLC16A11Q8NCK7 471 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 HOXB13Q92826 284 aaPredicted RBP18.77■□□□□ 0.6
CLN3-219ENST00000565778 ZBTB9Q96C00 473 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 INTS12Q96CB8 462 aaKnown RBP18.77■□□□□ 0.6
CLN3-219ENST00000565778 GIMAP5Q96F15 307 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 C16orf58Q96GQ5 468 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 PKNOX2Q96KN3 472 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 MS4A4EQ96PG1 132 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 UCN2Q96RP3 112 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 PRPF18Q99633 342 aaKnown RBP18.77■□□□□ 0.6
CLN3-219ENST00000565778 EIF3LQ9Y262 564 aaKnown RBP18.77■□□□□ 0.6
CLN3-219ENST00000565778 SNX8Q9Y5X2 465 aa18.77■□□□□ 0.6
CLN3-219ENST00000565778 LYPLA1O75608 230 aaPredicted RBP18.76■□□□□ 0.59
CLN3-219ENST00000565778 PRIM2P49643 509 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 CLDN18P56856 261 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 B3GALT5-AS1P59052 145 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 FOXF2Q12947 444 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 GANABQ14697 944 aaKnown RBP18.76■□□□□ 0.59
CLN3-219ENST00000565778 PTGR1Q14914 329 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 MLC1Q15049 377 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms