RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CLK3P49761 638 aaKnown RBP15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 DIO3P55073 304 aa15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 EEFSECP57772 596 aaKnown RBP15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 PRR5P85299 388 aa15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 SH2D4BQ5SQS7 431 aa15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 UBLCP1Q8WVY7 318 aaPredicted RBP15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 SMPDL3BQ92485 455 aa15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 GATA5Q9BWX5 397 aaPredicted RBP15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 C12orf65Q9H3J6 166 aaKnown RBP15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 PTGES2Q9H7Z7 377 aa15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 LRTM1Q9HBL6 345 aa15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 HHATLQ9HCP6 504 aa15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 MKS1Q9NXB0 559 aa15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 RPH3AQ9Y2J0 694 aaPredicted RBP15.55■□□□□ 0.08
VPS9D1-203ENST00000563798 NKX2-2O95096 273 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 HRGP04196 525 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 NGFRP08138 427 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 PRPS2P11908 318 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 NEFHP12036 1026 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 CD99P14209 185 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 HK1P19367 917 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 C17orf67Q0P5P2 114 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 PDE7AQ13946 482 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 PCLAFQ15004 111 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 TMEM44Q2T9K0 475 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 KANK2Q63ZY3 851 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 CLEC6AQ6EIG7 209 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 PLXDC2Q6UX71 529 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 ZNF551Q7Z340 670 aaPredicted RBP15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 LUZP2Q86TE4 346 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 MED12LQ86YW9 2145 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 C10orf107Q8IVU9 208 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 GCNT2Q8N0V5 402 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 MEIOBQ8N635 442 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 OR2T11Q8NH01 316 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 DUSP19Q8WTR2 217 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 STARD4Q96DR4 205 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 C1GALT1C1Q96EU7 318 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 IQCGQ9H095 443 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 TUBB1Q9H4B7 451 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 REEP4Q9H6H4 257 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 L2HGDHQ9H9P8 463 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 ACSS1Q9NUB1 689 aaPredicted RBP15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 MED11Q9P086 117 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 PLEKHA6Q9Y2H5 1048 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 TMED5Q9Y3A6 229 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 ZNF337Q9Y3M9 751 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 ZNF175Q9Y473 711 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 MPDZO75970 2070 aa15.54■□□□□ 0.08
VPS9D1-203ENST00000563798 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 OR2M5A3KFT3 312 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 SH3D21A4FU49 640 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 SLC22A20A6NK97 555 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 PDPK1O15530 556 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 TRIM13O60858 407 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 KCNH1O95259 989 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 ATE1O95260 518 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 RAF1P04049 648 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 SDC1P18827 310 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 GABRA3P34903 492 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 CPA2P48052 419 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 SUCLG1P53597 346 aaKnown RBP15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 VPS26BQ4G0F5 336 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 RFTN2Q52LD8 501 aaPredicted RBP15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 EXOSC6Q5RKV6 272 aaKnown RBP15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 RAET1LQ5VY80 246 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 CHMP1BQ7LBR1 199 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 MARCH3Q86UD3 253 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 CDRT4Q8N9R6 151 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 CCDC63Q8NA47 563 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 CEP70Q8NHQ1 597 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 FAM110BQ8TC76 370 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 EPS8L3Q8TE67 593 aaKnown RBP15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 MTERF3Q96E29 417 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 GIMAP5Q96F15 307 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 PIGQQ9BRB3 760 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 RNF122Q9H9V4 155 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 DNAJC15Q9Y5T4 150 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 PTGDR2Q9Y5Y4 395 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 AP4B1Q9Y6B7 739 aa15.53■□□□□ 0.08
VPS9D1-203ENST00000563798 MAP1AP78559 2803 aaPredicted RBP15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 GXYLT2A0PJZ3 443 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 ALG1L2C9J202 215 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 LSM1O15116 133 aaKnown RBP15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 UTS2O95399 124 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 IGKV1D-16P01601 117 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 LCN1P31025 176 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 KIR2DL2P43627 348 aaPredicted RBP15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 FGFBP1Q14512 234 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 GUSBP1Q15486 140 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 KRTAP21-3Q3LHN1 58 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 UGT3A2Q3SY77 523 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 ZNF385BQ569K4 471 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 APOOLQ6UXV4 268 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 C4orf33Q8N1A6 199 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 METTL25Q8N6Q8 603 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 ZFP28Q8NHY6 868 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 PPCDCQ96CD2 204 aa15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 ZBED6CLQ96FA7 236 aaPredicted RBP15.52■□□□□ 0.08
VPS9D1-203ENST00000563798 YIPF4Q9BSR8 244 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms