RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CDH23Q9H251 3354 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 NUP214P35658 2090 aaPredicted RBP6.99□□□□□ -1.29
VPS39-204ENST00000561818 SPAG17Q6Q759 2223 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 IGLV3-12A0A075B6K2 115 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 IGHV5-51A0A0C4DH38 117 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 FAM86C2PA6NEL3 165 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CLDN24A6NM45 220 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 ZNF99A8MXY4 864 aaPredicted RBP6.99□□□□□ -1.29
VPS39-204ENST00000561818 SCDO00767 359 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 TO15178 435 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CHP2O43745 196 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 MAN1A2O60476 641 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 FOXD2O60548 495 aaPredicted RBP6.99□□□□□ -1.29
VPS39-204ENST00000561818 HCN1O60741 890 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 LDB3O75112 727 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 KCNK2O95069 426 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 ACP2P11117 423 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CKMT1AP12532 417 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 TDGF1P13385 188 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 TNNI3P19429 210 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CCNA2P20248 432 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 AGXTP21549 392 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 DRD5P21918 477 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 BCKDHBP21953 392 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 PRKACGP22612 351 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CHMP24386 653 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 GABRA3P34903 492 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 GRK6P43250 576 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 SLC9A3P48764 834 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 MAP2K6P52564 334 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 NRG3P56975 720 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 RAB15P59190 212 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 TUBA1BP68363 451 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CHRNEQ04844 493 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 FUT5Q11128 374 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 EFR3AQ14156 821 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 PTGES3Q15185 160 aaKnown RBP6.99□□□□□ -1.29
VPS39-204ENST00000561818 LTB4RQ15722 352 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 MAPK11Q15759 364 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 SYT16Q17RD7 645 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 SYT6Q5T7P8 510 aaPredicted RBP6.99□□□□□ -1.29
VPS39-204ENST00000561818 ARHGAP40Q5TG30 622 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CWF19L1Q69YN2 538 aaKnown RBP6.99□□□□□ -1.29
VPS39-204ENST00000561818 C12orf73Q69YU5 71 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 PGBD2Q6P3X8 592 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 ULK3Q6PHR2 472 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 FAM111BQ6SJ93 734 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 KLHL17Q6TDP4 642 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 GDPGP1Q6ZNW5 385 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 TUBA1AQ71U36 451 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 SLC29A4Q7RTT9 530 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 BMP8AQ7Z5Y6 402 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 TMEM179BQ7Z7N9 219 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 GALNT10Q86SR1 603 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 GID4Q8IVV7 300 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 DND1Q8IYX4 353 aaKnown RBP6.99□□□□□ -1.29
VPS39-204ENST00000561818 SPARTQ8N0X7 666 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 STX19Q8N4C7 294 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 FAM26EQ8N5C1 309 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 PLPP5Q8NEB5 264 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 BPIFB6Q8NFQ5 453 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 OR2T33Q8NG76 320 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 OR6T1Q8NGN1 323 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 OR8K3Q8NH51 312 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 OR52J3Q8NH60 311 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 VANGL1Q8TAA9 524 aaPredicted RBP6.99□□□□□ -1.29
VPS39-204ENST00000561818 FAM110BQ8TC76 370 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 SLC7A13Q8TCU3 470 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 SAP25Q8TEE9 199 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 MUL1Q969V5 352 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 TP53INP1Q96A56 240 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 SLC41A3Q96GZ6 507 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 PEX11GQ96HA9 241 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 MCHR1Q99705 422 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 MACROD1Q9BQ69 325 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 ZPBPQ9BS86 351 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 FUZQ9BT04 418 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CDCA4Q9BXL8 241 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 OR10A5Q9H207 317 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 FOLH1BQ9HBA9 442 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 UBQLN4Q9NRR5 601 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 INPP5EQ9NRR6 644 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 FGF21Q9NSA1 209 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 MUTYHQ9UIF7 546 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 PSORS1C1Q9UIG5 152 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 CBLCQ9ULV8 474 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 ERGIC3Q9Y282 383 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 MED31Q9Y3C7 131 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 SNX11Q9Y5W9 270 aa6.99□□□□□ -1.29
VPS39-204ENST00000561818 IGKV3D-11A0A0A0MRZ8 115 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 ARPC4-TTLL3A0A0A6YYG9 625 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 A0A1W2PQD3 144 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 TCRBV16S1A1N1A0A5B0 115 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 ZNF860A6NHJ4 632 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 FFAR1O14842 300 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 FLRT2O43155 660 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 PRKRAO75569 313 aaKnown RBP6.98□□□□□ -1.29
VPS39-204ENST00000561818 OR6B1O95007 311 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 DIRAS1O95057 198 aa6.98□□□□□ -1.29
VPS39-204ENST00000561818 CBX7O95931 251 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms