RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 FOXD3Q9UJU5 478 aaPredicted RBP9.32□□□□□ -0.92
CLK3-205ENST00000561673 ABCG2Q9UNQ0 655 aa9.32□□□□□ -0.92
CLK3-205ENST00000561673 TMED5Q9Y3A6 229 aa9.32□□□□□ -0.92
CLK3-205ENST00000561673 ZNF469Q96JG9 3925 aaPredicted RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 ANKRD17O75179 2603 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 FAM221AA4D161 298 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 EEF1E1-BLOC1S5C9J1V9 151 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 PIP5K1BO14986 540 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 EEF1E1O43324 174 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 TBX19O60806 448 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 UTS2O95399 124 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 IGKV1D-16P01601 117 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 PRPS2P11908 318 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 BCKDHAP12694 445 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 CREB1P16220 341 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 ZNF708P17019 499 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 DNAJA1P31689 397 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 ARRB2P32121 409 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 GPC1P35052 558 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 MAP3K8P41279 467 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 FRKP42685 505 aaPredicted RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 RFX3P48380 749 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 PRKAG1P54619 331 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 PSMD4P55036 377 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 STX5Q13190 355 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 PDE7AQ13946 482 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 BCL2A1Q16548 175 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 FLYWCH1Q4VC44 716 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 APOOLQ6UXV4 268 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 ZCCHC23Q6ZST2 131 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 EXOC3L1Q86VI1 746 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 NUP43Q8NFH3 380 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 CEP70Q8NHQ1 597 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 AGR3Q8TD06 166 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 FAM222BQ8WU58 562 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 PIK3R3Q92569 461 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 HOXB13Q92826 284 aaPredicted RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 INTS12Q96CB8 462 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 PPCDCQ96CD2 204 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 GIMAP5Q96F15 307 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 ZBED6CLQ96FA7 236 aaPredicted RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 TM9SF2Q99805 663 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 GPATCH1Q9BRR8 931 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 SDHAF3Q9NRP4 125 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 RASSF1Q9NS23 344 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 FAM120CQ9NX05 1096 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 DNAJB12Q9NXW2 375 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 NTMQ9P121 344 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 CLCF1Q9UBD9 225 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 GIMAP2Q9UG22 337 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 MRTO4Q9UKD2 239 aaKnown RBP9.31□□□□□ -0.92
CLK3-205ENST00000561673 ZNF337Q9Y3M9 751 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 KIAA1549Q9HCM3 1950 aa9.31□□□□□ -0.92
CLK3-205ENST00000561673 MED12Q93074 2177 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 ARHGAP21Q5T5U3 1957 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 TUBAL3A6NHL2 446 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 TTC36A6NLP5 189 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 A6NNC1 897 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 PEX11AO75192 247 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 KCNH1O95259 989 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 SLU7O95391 586 aaKnown RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 TGM6O95932 706 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 HK1P19367 917 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 EFNA1P20827 205 aaPredicted RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 ASMTP46597 345 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 CLK3P49761 638 aaKnown RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 CLDN15P56746 228 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 PRR5P85299 388 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 GANABQ14697 944 aaKnown RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 GRAMD1BQ3KR37 738 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 VPS26BQ4G0F5 336 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 SWT1Q5T5J6 900 aaKnown RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 WDR93Q6P2C0 686 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 EMBQ6PCB8 327 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 SPNS3Q6ZMD2 512 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 GALNT10Q86SR1 603 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 KIF18BQ86Y91 864 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 GCNT2Q8N0V5 402 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 CDRT4Q8N9R6 151 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 OR5M1Q8NGP8 315 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 ZFP28Q8NHY6 868 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 LINC01560Q8TB33 94 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 GPR151Q8TDV0 419 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 SLC9A6Q92581 669 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 CAVIN3Q969G5 261 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 C1GALT1C1Q96EU7 318 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 RMND5BQ96G75 393 aaPredicted RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 C16orf58Q96GQ5 468 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 C3orf30Q96M34 536 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 ZFP3Q96NJ6 502 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 SFXN3Q9BWM7 321 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 POLDIP3Q9BY77 421 aaKnown RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 TBL1XR1Q9BZK7 514 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 CLEC4MQ9H2X3 399 aaPredicted RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 LIME1Q9H400 295 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 C3orf14Q9HBI5 128 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 ACSS1Q9NUB1 689 aaPredicted RBP9.3□□□□□ -0.92
CLK3-205ENST00000561673 ZDHHC2Q9UIJ5 367 aa9.3□□□□□ -0.92
CLK3-205ENST00000561673 ZFHX3Q15911 3703 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms