RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 NDUFAF4Q9P032 175 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PDP1Q9P0J1 537 aaPredicted RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 SPASTQ9UBP0 616 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ZNF282Q9UDV7 671 aaPredicted RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 ENOPH1Q9UHY7 261 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ATP6V1HQ9UI12 483 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 SLCO3A1Q9UIG8 710 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 CRLS1Q9UJA2 301 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ZNF229Q9UJW7 825 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 KCND3Q9UK17 655 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 MKLN1Q9UL63 735 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 CFL2Q9Y281 166 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PRG3Q9Y2Y8 225 aaPredicted RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 LSM2Q9Y333 95 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 SAMHD1Q9Y3Z3 626 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 YIPF1Q9Y548 306 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 ANGPTL3Q9Y5C1 460 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 PEX16Q9Y5Y5 336 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 CFAP20Q9Y6A4 193 aaKnown RBP2.32□□□□□ -2.04
SPG11-223ENST00000560858 U3KQV3 271 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 V9GYH0 126 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 TICRRQ7Z2Z1 1910 aa2.32□□□□□ -2.04
SPG11-223ENST00000560858 LRP4O75096 1905 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 A0A1W2PQ67 120 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 FAM172BPA6NC97 362 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PRSS29PA6NIE9 313 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ARHGEF33A8MVX0 844 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MYO1GB0I1T2 1018 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF670-ZNF695F2Z2N8 137 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 H0Y626 953 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 H3BQ06 376 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 K7ERQ8 282 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 M0QYG6 137 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TNFRSF11BO00300 401 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CACNB4O00305 520 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 CCRL2O00421 344 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PLK4O00444 970 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 NPC1O15118 1278 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 KPNA5O15131 536 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ADAM12O43184 909 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ASNA1O43681 348 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SCO2O43819 266 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PCDH7O60245 1069 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 KIAA0513O60268 411 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MPZL2O60487 215 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TPST2O60704 377 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TBX19O60806 448 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TBL1XO60907 577 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 NBNO60934 754 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TRIM3O75382 744 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 PSIP1O75475 530 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF821O75541 412 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 UGT2B17O75795 530 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MYO1DO94832 1006 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SLCO2B1O94956 709 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 AP2A2O94973 939 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 DIRAS1O95057 198 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CCNB2O95067 398 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 LRATO95237 230 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TRIM16O95361 564 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CLDN7O95471 211 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 LGI1O95970 557 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ADAP00813 363 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 HLA-DQB1P01920 261 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 C1QCP02747 245 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 RB1P06400 928 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 STSP08842 583 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ADRA2AP08913 450 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CD63P08962 238 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 OR56A5P0C7T3 313 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 FTH1P19P0C7X4 201 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 DBTP11182 482 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 LAMP1P11279 417 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SRCP12931 536 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 HLA-EP13747 358 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 COX7A2P14406 83 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SPNP16150 400 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF24P17028 368 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF30P17039 623 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ITGA2P17301 1181 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 DDX5P17844 614 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 RHCEP18577 417 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CYP2A7P20853 494 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 IDSP22304 550 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CHMP24386 653 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 IMPA1P29218 277 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SERPINA4P29622 427 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 C21orf33P30042 268 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 CCR7P32248 378 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 S100A5P33763 92 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 THBS4P35443 961 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 HNF1BP35680 557 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 RPL3P39023 403 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 DDOSTP39656 456 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MAPK9P45984 424 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 RPS5P46782 204 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 TUFMP49411 452 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 PCYT1AP49585 367 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PRLHRP49683 370 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 RGS6P49758 472 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms