RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 RAET1LQ5VY80 246 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 APOOLQ6UXV4 268 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 SZRD1Q7Z422 152 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 GALNT10Q86SR1 603 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 DDIASQ8IXT1 998 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 FBXO30Q8TB52 745 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 GPR151Q8TDV0 419 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 SMPDL3BQ92485 455 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 SLC9A6Q92581 669 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 PPCDCQ96CD2 204 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 METTL2AQ96IZ6 378 aaKnown RBP9.24□□□□□ -0.93
LDLR-214ENST00000560628 DOCK7Q96N67 2140 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 UCN2Q96RP3 112 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 YIPF4Q9BSR8 244 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 LMF2Q9BU23 707 aaKnown RBP9.24□□□□□ -0.93
LDLR-214ENST00000560628 MECRQ9BV79 373 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 SFXN3Q9BWM7 321 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 TBL1XR1Q9BZK7 514 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 IQCGQ9H095 443 aaKnown RBP9.24□□□□□ -0.93
LDLR-214ENST00000560628 REEP4Q9H6H4 257 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 PPCSQ9HAB8 311 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 GALNT8Q9NY28 637 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 SLC17A7Q9P2U7 560 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 GIMAP2Q9UG22 337 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 MID2Q9UJV3 735 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 MRTO4Q9UKD2 239 aaKnown RBP9.24□□□□□ -0.93
LDLR-214ENST00000560628 TRAF6Q9Y4K3 522 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 DNAJC15Q9Y5T4 150 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 HIVEP1P15822 2718 aa9.24□□□□□ -0.93
LDLR-214ENST00000560628 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 A0A1W2PNV4 684 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 OR2M5A3KFT3 312 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 SLC22A20A6NK97 555 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 A8MXE2 369 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 SHISA8B8ZZ34 492 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 H3BML4 177 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 SEC14L5O43304 696 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 TNFSF13O75888 250 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 ANGPTL1O95841 491 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 CHEK2O96017 543 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 DNASE1P24855 282 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 SUCLG1P53597 346 aaKnown RBP9.23□□□□□ -0.93
LDLR-214ENST00000560628 CLDN20P56880 219 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 RIPPLY3P57055 190 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 RPL38P63173 70 aaKnown RBP9.23□□□□□ -0.93
LDLR-214ENST00000560628 FAM27E3Q08E93 113 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 POU4F3Q15319 338 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 GRAMD1BQ3KR37 738 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 ARL13AQ5H913 290 aaPredicted RBP9.23□□□□□ -0.93
LDLR-214ENST00000560628 KANK2Q63ZY3 851 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 FIGNL1Q6PIW4 674 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 MEIOBQ8N635 442 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 CNEP1R1Q8N9A8 125 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 BANPQ8N9N5 519 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 GATSQ8NAP1 163 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 NUP43Q8NFH3 380 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 OR4C3Q8NH37 302 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 CEP70Q8NHQ1 597 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 AGR3Q8TD06 166 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 FIG4Q92562 907 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 NINJ1Q92982 152 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 C1GALT1C1Q96EU7 318 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 OTUB1Q96FW1 271 aaPredicted RBP9.23□□□□□ -0.93
LDLR-214ENST00000560628 C16orf58Q96GQ5 468 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 ZFP3Q96NJ6 502 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 FAM111AQ96PZ2 611 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 CCT7Q99832 543 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 FOXC2Q99958 501 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 PIGMQ9H3S5 423 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 PTGES2Q9H7Z7 377 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 ANKZF1Q9H8Y5 726 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 L2HGDHQ9H9P8 463 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 C3orf14Q9HBI5 128 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 FAM120CQ9NX05 1096 aaKnown RBP9.23□□□□□ -0.93
LDLR-214ENST00000560628 ABCG2Q9UNQ0 655 aa9.23□□□□□ -0.93
LDLR-214ENST00000560628 ANKRD17O75179 2603 aaKnown RBP9.23□□□□□ -0.93
LDLR-214ENST00000560628 PCNX3Q9H6A9 2034 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 NPIPB8E9PQR5 432 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 PIP5K1BO14986 540 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 LSM1O15116 133 aaKnown RBP9.22□□□□□ -0.93
LDLR-214ENST00000560628 HCRTR2O43614 444 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 DIAPH2O60879 1101 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 PEX11AO75192 247 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 NKX2-2O95096 273 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 KCNH1O95259 989 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 OPN1LWP04000 364 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 FGF4P08620 206 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 ACP2P11117 423 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 NEFHP12036 1026 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 BCKDHAP12694 445 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 CD99P14209 185 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 CPOXP36551 454 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 PSMD4P55036 377 aaKnown RBP9.22□□□□□ -0.93
LDLR-214ENST00000560628 DIO3P55073 304 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 SIRPAP78324 504 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 SORDQ00796 357 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 C17orf67Q0P5P2 114 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 UGT3A2Q3SY77 523 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 VWA1Q6PCB0 445 aa9.22□□□□□ -0.93
LDLR-214ENST00000560628 ZCCHC23Q6ZST2 131 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms