RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 GPAT3Q53EU6 434 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 RUNDC3AQ59EK9 446 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 GCNT6Q5T4J0 391 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 PRAMEF20Q5VT98 475 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 HEPHL1Q6MZM0 1159 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 DLEU7Q6UYE1 221 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 HACD2Q6Y1H2 254 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 MDGA2Q7Z553 956 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 ZNF227Q86WZ6 799 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 PTRH1Q86Y79 214 aaKnown RBP9.25□□□□□ -0.93
USP3-216ENST00000559873 TREML1Q86YW5 311 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 MISPQ8IVT2 679 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 METTL25Q8N6Q8 603 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 FAM110BQ8TC76 370 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 PMM1Q92871 262 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 RAB8BQ92930 207 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 LRRC58Q96CX6 371 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 TRNT1Q96Q11 434 aaKnown RBP9.25□□□□□ -0.93
USP3-216ENST00000559873 HOPXQ9BPY8 73 aaPredicted RBP9.25□□□□□ -0.93
USP3-216ENST00000559873 CPPED1Q9BRF8 314 aaPredicted RBP9.25□□□□□ -0.93
USP3-216ENST00000559873 THUMPD3Q9BV44 507 aaKnown RBP9.25□□□□□ -0.93
USP3-216ENST00000559873 SPATA9Q9BWV2 254 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 TBL1XR1Q9BZK7 514 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 ZNF350Q9GZX5 532 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 IL1RL2Q9HB29 575 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 SH2D2AQ9NP31 389 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 UBQLN4Q9NRR5 601 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 SLC6A13Q9NSD5 602 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 SLC25A37Q9NYZ2 338 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 SLAMF8Q9P0V8 285 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 TAGLN3Q9UI15 199 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 CNOT11Q9UKZ1 510 aaKnown RBP9.25□□□□□ -0.93
USP3-216ENST00000559873 WDR45Q9Y484 360 aa9.25□□□□□ -0.93
USP3-216ENST00000559873 AIM2O14862 343 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 SCO2O43819 266 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 SLC28A2O43868 658 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 UNC5CO95185 931 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 UTS2O95399 124 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 BCHEP06276 602 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 BMP2P12643 396 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 ETFAP13804 333 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 GPX2P18283 190 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 CNR1P21554 472 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 DCTP40126 519 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 CASP3P42574 277 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 ST13P50502 369 aaKnown RBP9.24□□□□□ -0.93
USP3-216ENST00000559873 CASP9P55211 416 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 MTPNP58546 118 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 GPR85P60893 370 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 MXRA7P84157 204 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 RBBP4Q09028 425 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 CAPRIN1Q14444 709 aaKnown RBP9.24□□□□□ -0.93
USP3-216ENST00000559873 KRT72Q14CN4 511 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 ZNF630Q2M218 657 aaPredicted RBP9.24□□□□□ -0.93
USP3-216ENST00000559873 PLEKHN1Q494U1 663 aaPredicted RBP9.24□□□□□ -0.93
USP3-216ENST00000559873 COX20Q5RI15 118 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 CCNJQ5T5M9 372 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 PRAMEF8Q5VWM4 474 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 PRAMEF7Q5VXH5 474 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 LRRC74BQ6ZQY2 392 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 SERPINA11Q86U17 422 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 SLC22A16Q86VW1 577 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 SLC30A8Q8IWU4 369 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 SULF2Q8IWU5 870 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 MSRB3Q8IXL7 192 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 ZNF619Q8N2I2 560 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 TMEM41AQ96HV5 264 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 FRMD6Q96NE9 622 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 NODALQ96S42 347 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 SDF2Q99470 211 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 ECSITQ9BQ95 431 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 ANGPTL4Q9BY76 406 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 HES7Q9BYE0 225 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 A4GALTQ9NPC4 353 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 LUZP4Q9P127 313 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 PPP4R1LQ9P1A2 415 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 MAP10Q9P2G4 905 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 ANGPT4Q9Y264 503 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 L3MBTL1Q9Y468 752 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 WIF1Q9Y5W5 379 aa9.24□□□□□ -0.93
USP3-216ENST00000559873 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.24□□□□□ -0.93
USP3-216ENST00000559873 EXPH5Q8NEV8 1989 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 RP1L1Q8IWN7 2480 aaPredicted RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 A0A1W2PQD3 144 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 ALG1L2C9J202 215 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 G3V3Y1 287 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 FXYD1O00168 92 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 TFECO14948 347 aaPredicted RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 SNPHO15079 494 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 NDUFB5O43674 189 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 KIAA0513O60268 411 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 DNAJA2O60884 412 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 H6PDO95479 791 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 ESRRAP11474 423 aaPredicted RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 CD1EP15812 388 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 TBXA2RP21731 343 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 CALB2P22676 271 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 GCKP35557 465 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 DNASE1L1P49184 302 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 MVDP53602 400 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms