RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 PAQR9Q6ZVX9 377 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 FRA10AC1Q70Z53 315 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 P4HA3Q7Z4N8 544 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 VPS36Q86VN1 386 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 OR10H4Q8NGA5 316 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 MCHR2Q969V1 340 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 TMEM80Q96HE8 168 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 CCDC43Q96MW1 224 aaKnown RBP2.37□□□□□ -2.03
VPS13C-207ENST00000558919 IL4I1Q96RQ9 567 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 NICN1Q9BSH3 213 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 BCAP29Q9UHQ4 241 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF221Q9UK13 617 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF490Q9ULM2 529 aaPredicted RBP2.37□□□□□ -2.03
VPS13C-207ENST00000558919 NOL7Q9UMY1 257 aaKnown RBP2.37□□□□□ -2.03
VPS13C-207ENST00000558919 NACAE9PAV3 2078 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 TMEM110-MUSTN1A8MSY1 372 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 VEGFDO43915 354 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF254O75437 659 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 CD55P08174 381 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 ASNSP08243 561 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF853P0CG23 659 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 GABRR1P24046 479 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 GPC3P51654 580 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 MYBPC1Q00872 1141 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 ELAVL3Q14576 367 aaKnown RBP2.36□□□□□ -2.03
VPS13C-207ENST00000558919 LASP1Q14847 261 aaKnown RBP2.36□□□□□ -2.03
VPS13C-207ENST00000558919 HERPUD1Q15011 391 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 TEX44Q53QW1 395 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 EOGTQ5NDL2 527 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 IL23RQ5VWK5 629 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 CXCL17Q6UXB2 119 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 BTNL3Q6UXE8 466 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 STAC2Q6ZMT1 411 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 HSD17B13Q7Z5P4 300 aaPredicted RBP2.36□□□□□ -2.03
VPS13C-207ENST00000558919 ADAMTSL2Q86TH1 951 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 TMEM110Q86TL2 294 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 PPP1R27Q86WC6 154 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 ENTHD1Q8IYW4 607 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 ARFGAP2Q8N6H7 521 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 Q8N9L7 120 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 EXOC6Q8TAG9 804 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 KRT35Q92764 455 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 ART4Q93070 314 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 MARC2Q969Z3 335 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 TADA1Q96BN2 335 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 FGGYQ96C11 551 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 CABS1Q96KC9 395 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 SMIM14Q96QK8 99 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 PLEKHF1Q96S99 279 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 CNPY3Q9BT09 278 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 SIRPDQ9H106 197 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 PTGES2Q9H7Z7 377 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 PNO1Q9NRX1 252 aaKnown RBP2.36□□□□□ -2.03
VPS13C-207ENST00000558919 GALPQ9UBC7 116 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 APPL1Q9UKG1 709 aa2.36□□□□□ -2.03
VPS13C-207ENST00000558919 TTC26A0AVF1 554 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 E9PMD0 336 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 H3BTX0 84 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 K7ENP7 123 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 SGK494L7N484 410 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 ALOX15BO15296 676 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 PPIHO43447 177 aaKnown RBP2.35□□□□□ -2.03
VPS13C-207ENST00000558919 TBL1XO60907 577 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 MMP23AO75900 390 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 ANP32DO95626 131 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 JCHAINP01591 159 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 CXCL10P02778 98 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 COPB2P35606 906 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 RND3P61587 244 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 ACTN3Q08043 901 aaPredicted RBP2.35□□□□□ -2.03
VPS13C-207ENST00000558919 DPYSL3Q14195 570 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 UBE2V2Q15819 145 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 SLX4IPQ5VYV7 408 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 SULT1C3Q6IMI6 304 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 Q6P435 159 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 TIFABQ6ZNK6 161 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 BPIFB2Q8N4F0 458 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 CCDC71LQ8N9Z2 235 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 ANKRD49Q8WVL7 239 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 FAM104AQ969W3 186 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 WRAP53Q9BUR4 548 aaKnown RBP2.35□□□□□ -2.03
VPS13C-207ENST00000558919 RBM28Q9NW13 759 aaKnown RBP2.35□□□□□ -2.03
VPS13C-207ENST00000558919 ONECUT1Q9UBC0 465 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 KCNN3Q9UGI6 736 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 DNPEPQ9ULA0 475 aa2.35□□□□□ -2.03
VPS13C-207ENST00000558919 CCER2I3L3R5 266 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 ZBTB14O43829 449 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 NDUFA7O95182 113 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 OLFM2O95897 454 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 CHRNA1P02708 482 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 HPNP05981 417 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 HOXD10P28358 340 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 PTPN6P29350 595 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 RPL4P36578 427 aaKnown RBP2.34□□□□□ -2.03
VPS13C-207ENST00000558919 PLOD1Q02809 727 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF154Q13106 437 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 C1QTNF12Q5T7M4 302 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 ETFRF1Q6IPR1 90 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 IL34Q6ZMJ4 242 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 IFNEQ86WN2 208 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms