RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CARD6Q9BX69 1037 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 CCSER1Q9C0I3 900 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 PDFQ9HBH1 243 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 CGNQ9P2M7 1197 aaKnown RBP3.17□□□□□ -1.9
SCFD1-221ENST00000556534 CA5BQ9Y2D0 317 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 FKBP7Q9Y680 259 aa3.17□□□□□ -1.9
SCFD1-221ENST00000556534 IMPA2O14732 288 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 AKR7A3O95154 331 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 DIRAS3O95661 229 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 KRT6AP02538 564 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 KRT6BP04259 564 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 H2AFZP0C0S5 128 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 ZP3P21754 424 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 PRDX6P30041 224 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 DRD3P35462 400 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 ACAA2P42765 397 aaKnown RBP3.16□□□□□ -1.9
SCFD1-221ENST00000556534 ASMTP46597 345 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 KRT6CP48668 564 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 NOP14P78316 857 aaKnown RBP3.16□□□□□ -1.9
SCFD1-221ENST00000556534 MYBPC1Q00872 1141 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 PUDPQ08623 228 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 DPYSQ14117 519 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 RAB35Q15286 201 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 PARP6Q2NL67 630 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 DCAF4L1Q3SXM0 396 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 RAET1GQ6H3X3 334 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 PAQR9Q6ZVX9 377 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 PARGQ86W56 976 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 C9orf40Q8IXQ3 194 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 SYAP1Q96A49 352 aaPredicted RBP3.16□□□□□ -1.9
SCFD1-221ENST00000556534 C14orf79Q96F83 325 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 POLE3Q9NRF9 147 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 PLSCR3Q9NRY6 295 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 CNOT2Q9NZN8 540 aaKnown RBP3.16□□□□□ -1.9
SCFD1-221ENST00000556534 TBK1Q9UHD2 729 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 ZNF490Q9ULM2 529 aaPredicted RBP3.16□□□□□ -1.9
SCFD1-221ENST00000556534 FLVCR1Q9Y5Y0 555 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 AP1M2Q9Y6Q5 423 aa3.16□□□□□ -1.9
SCFD1-221ENST00000556534 ARF4P18085 180 aaPredicted RBP3.15□□□□□ -1.91
SCFD1-221ENST00000556534 ELK1P19419 428 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 PTBP1P26599 531 aaKnown RBP eCLIP3.15□□□□□ -1.91
SCFD1-221ENST00000556534 CCND2P30279 289 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 HSPA1LP34931 641 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 NUMBP49757 651 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 RPS6P62753 249 aaKnown RBP3.15□□□□□ -1.91
SCFD1-221ENST00000556534 OVGP1Q12889 678 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 SBK1Q52WX2 424 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 IL23RQ5VWK5 629 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 MEDAGQ5VYS4 303 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 ZNF57Q68EA5 555 aaPredicted RBP3.15□□□□□ -1.91
SCFD1-221ENST00000556534 ZNF562Q6V9R5 426 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 MCOLN2Q8IZK6 566 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 CEND1Q8N111 149 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 MINDY2Q8NBR6 621 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 ADAMTS16Q8TE57 1224 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 DQX1Q8TE96 717 aaKnown RBP3.15□□□□□ -1.91
SCFD1-221ENST00000556534 U2AF1L4Q8WU68 220 aaKnown RBP3.15□□□□□ -1.91
SCFD1-221ENST00000556534 SLC25A36Q96CQ1 311 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 RAB17Q9H0T7 212 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 ZNF702PQ9H963 129 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 ELOVL2Q9NXB9 296 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 BCAP29Q9UHQ4 241 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 ABCG2Q9UNQ0 655 aa3.15□□□□□ -1.91
SCFD1-221ENST00000556534 EXOSC1Q9Y3B2 195 aaKnown RBP3.15□□□□□ -1.91
SCFD1-221ENST00000556534 F8WDY8 70 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 TM9SF1O15321 606 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 SSX5O60225 188 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 RAMP1O60894 148 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 PEX11AO75192 247 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 SERF1AO75920 110 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 IGHV3-23P01764 117 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 MDH1P40925 334 aaKnown RBP3.14□□□□□ -1.91
SCFD1-221ENST00000556534 P2RY4P51582 365 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 HERVK_113P63132 956 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 ERVK-8P63133 956 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 IL9RQ01113 521 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 SRYQ05066 204 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 CAMK4Q16566 473 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 ANKDD1AQ495B1 522 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 C2orf83Q53S99 150 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 PAGE2BQ5JRK9 111 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 ZNF658Q5TYW1 1059 aaPredicted RBP3.14□□□□□ -1.91
SCFD1-221ENST00000556534 DMKNQ6E0U4 476 aaPredicted RBP3.14□□□□□ -1.91
SCFD1-221ENST00000556534 IRGCQ6NXR0 463 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 OLFM4Q6UX06 510 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 TMEM26Q6ZUK4 368 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 RNF148Q8N7C7 305 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 OR56B1Q8NGI3 324 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 CCDC110Q8TBZ0 833 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 MAGEB18Q96M61 343 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 ERVK-6Q9BXR3 956 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 DPH5Q9H2P9 285 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 COQ10BQ9H8M1 238 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 ECT2Q9H8V3 914 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 SLC35D1Q9NTN3 355 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 DUS2Q9NX74 493 aaKnown RBP3.14□□□□□ -1.91
SCFD1-221ENST00000556534 CLIP2Q9UDT6 1046 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 IL20RAQ9UHF4 553 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 ATAD2BQ9ULI0 1458 aa3.14□□□□□ -1.91
SCFD1-221ENST00000556534 NCAPD2Q15021 1401 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms