RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TRBV5-3A0A0A0MS03 114 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 A0A1W2PQL4 384 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RPS10-NUDT3A0A1W2PQS6 291 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 NPEPPSL1A6NEC2 478 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RHPN2P1A8MT19 583 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF670-ZNF695F2Z2N8 137 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 KLK8O60259 260 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CSO75390 466 aaKnown RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 TP53P04637 393 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 SLC2A2P11168 524 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 HOXB3P14651 431 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 PSMA1P25786 263 aaKnown RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 FASLGP48023 281 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 TGM4P49221 684 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RGS4P49798 205 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CLCNKAP51800 687 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ERVPABLB-1P60509 514 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 HHEXQ03014 270 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CFHR1Q03591 330 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RIPPLY1Q0D2K3 151 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ABHD18Q0P651 414 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 MAD2L1Q13257 205 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 GNA13Q14344 377 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ISXQ2M1V0 245 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CFAP77Q6ZQR2 320 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 AMZ2Q86W34 360 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 C10orf111Q8N326 155 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 TMEM132CQ8N3T6 1108 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 B3GNT7Q8NFL0 401 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 OR7G3Q8NG95 312 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 OR52B6Q8NGF0 335 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 OR52H1Q8NGJ2 320 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CREB3L4Q8TEY5 395 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RIT1Q92963 219 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 PPP3R2Q96LZ3 170 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 OPALINQ96PE5 141 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 EPYCQ99645 322 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 NUDT22Q9BRQ3 303 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 TIMM29Q9BSF4 260 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 MARVELD1Q9BSK0 173 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 MIXL1Q9H2W2 232 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CLEC4MQ9H2X3 399 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RANBP3Q9H6Z4 567 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 GALNT9Q9HCQ5 603 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 IFT46Q9NQC8 304 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 MS4A12Q9NXJ0 267 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF226Q9NYT6 803 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CPNE7Q9UBL6 633 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 SEC14L4Q9UDX3 406 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ENTPD2Q9Y5L3 495 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 FKBP7Q9Y680 259 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CFAP20Q9Y6A4 193 aaKnown RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 OR5K4A6NMS3 321 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 E2F3O00716 465 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 PCDH17O14917 1159 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 LYRM1O43325 122 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 AP2A2O94973 939 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 HLA-DQB1P01920 261 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SEMG1P04279 462 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SCG5P05408 212 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CLEC2LP0C7M8 214 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 PNLIPP16233 465 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ZP3P21754 424 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 F8A1P23610 371 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 AOAHP28039 575 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CD1CP29017 333 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SSTR4P31391 388 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ALDH9A1P49189 494 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 MAN2A2P49641 1150 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 MAP2K6P52564 334 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 MXD1Q05195 221 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 TTLL9Q3SXZ7 439 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF574Q6ZN55 896 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 EIF3MQ7L2H7 374 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 GPSM1Q86YR5 675 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SLC44A2Q8IWA5 706 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 TAGAPQ8N103 731 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SLC34A3Q8N130 599 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ATP6V1C2Q8NEY4 427 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 OR6C4Q8NGE1 309 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SKA2Q8WVK7 121 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 UFD1Q92890 307 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SLC25A46Q96AG3 418 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ESAMQ96AP7 390 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 MTERF3Q96E29 417 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ZBED6CLQ96FA7 236 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 HSH2DQ96JZ2 352 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 FERD3LQ96RJ6 166 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ZCCHC2Q9C0B9 1178 aaKnown RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 ELOVL6Q9H5J4 265 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 HHATLQ9HCP6 504 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 LATS2Q9NRM7 1088 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 SLC6A13Q9NSD5 602 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 CUEDC1Q9NWM3 386 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-216ENST00000552909 IMPAD1Q9NX62 359 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 STUB1Q9UNE7 303 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 IGHV1OR21-1A0A087WYE8 117 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 HYKKA2RU49 373 aa7.18□□□□□ -1.26
LIMA1-216ENST00000552909 MGAT4DA6NG13 374 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms