RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 KLHL6Q8WZ60 621 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ORAI1Q96D31 301 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 YIPF6Q96EC8 236 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 RNFT2Q96EX2 444 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 KLHDC7BQ96G42 594 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR2A14Q96R47 310 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 C19orf43Q9BQ61 176 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 IFT27Q9BW83 186 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PRRG3Q9BZD7 231 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 KIR3DX1Q9H7L2 352 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 KLHL1Q9NR64 748 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 DHCR7Q9UBM7 475 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 AP1M2Q9Y6Q5 423 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 IMPA2O14732 288 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 CHST10O43529 356 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 GABARAPO95166 117 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 NUDT14O95848 222 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 MYL12AP19105 171 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TGFBR2P37173 567 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ETV5P41161 510 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PCYT1AP49585 367 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ARL4DP49703 201 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ETV1P50549 477 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 CDH11P55287 796 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 BNC1Q01954 994 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 HTR4Q13639 388 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TUBA3CQ13748 450 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 INAVAQ3KP66 663 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 MRPL2Q5T653 305 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 FCRL6Q6DN72 434 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR5M10Q6IEU7 315 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 BHLHB9Q6PI77 547 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TSSK4Q6SA08 328 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 RNF165Q6ZSG1 346 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 GPR155Q7Z3F1 870 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 KIF18BQ86Y91 864 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 KLBQ86Z14 1044 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SLC22A18ASQ8N1D0 253 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF655Q8N720 491 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 MFSD9Q8NBP5 474 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SRFBP1Q8NEF9 429 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR52R1Q8NGF1 315 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR52E4Q8NGH9 312 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR13C2Q8NGS9 318 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PIGXQ8TBF5 258 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZDHHC1Q8WTX9 485 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 IPCEF1Q8WWN9 437 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 CNOT9Q92600 299 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 EFHD2Q96C19 240 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 DMRTB1Q96MA1 342 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 DEPDC7Q96QD5 511 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZFYVE21Q9BQ24 234 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 BEX2Q9BXY8 128 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR8D2Q9GZM6 311 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TRIM45Q9H8W5 580 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 GPN2Q9H9Y4 310 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TMEM165Q9HC07 324 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 C20orf141Q9NUB4 165 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TMEM9Q9P0T7 183 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF346Q9UL40 294 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PCDH15Q96QU1 1955 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 MPDZO75970 2070 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 FUOMA2VDF0 154 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 C2orf72A6NCS6 295 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 LOC110117498-PIK3R3F6TDL0 507 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 FAAHO00519 579 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SLC22A1O15245 554 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TPD52L2O43399 206 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 CSO75390 466 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OPN1LWP04000 364 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ACP2P11117 423 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SPNP16150 400 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ACVR1BP36896 505 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 RPS19P39019 145 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 NAA10P41227 235 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 GCGRP47871 477 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TPTEP56180 551 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 RPS25P62851 125 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF33BQ06732 778 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SLC3A1Q07837 685 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 HNRNPA0Q13151 305 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PDZK1Q5T2W1 519 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PLAG1Q6DJT9 500 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ARL9Q6T311 187 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 IL20RBQ6UXL0 311 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TTLL10Q6ZVT0 673 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ABI3BPQ7Z7G0 1075 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 PAQR7Q86WK9 346 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ALDH16A1Q8IZ83 802 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TTLQ8NG68 377 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR56A1Q8NGH5 318 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR6Q1Q8NGQ2 317 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 DYNC2LI1Q8TCX1 351 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SLC41A3Q96GZ6 507 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 TMEM80Q96HE8 168 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 OR2A5Q96R48 311 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 SECISBP2Q96T21 854 aaKnown RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 GABARAPL1Q9H0R8 117 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 FN3KQ9H479 309 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms