RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 GABRA3P34903 492 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 SERPINB4P48594 390 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 AGFG1P52594 562 aaKnown RBP9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 IST1P53990 364 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 RPS3AP61247 264 aaKnown RBP9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 PRR5P85299 388 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 RAET1LQ5VY80 246 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 KANK2Q63ZY3 851 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 CLEC6AQ6EIG7 209 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 Q6ZSR9 355 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 C10orf107Q8IVU9 208 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 GSPT2Q8IYD1 628 aaKnown RBP9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 OR2M3Q8NG83 312 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 GPR151Q8TDV0 419 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 EPS8L3Q8TE67 593 aaKnown RBP9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 DUSP19Q8WTR2 217 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 HOXB13Q92826 284 aaPredicted RBP9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 FCRL1Q96LA6 429 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 PPP3R2Q96LZ3 170 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 CXXC4Q9H2H0 198 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 PAQR5Q9NXK6 330 aaPredicted RBP9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 SH3BP4Q9P0V3 963 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 NTMQ9P121 344 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 NDRG3Q9UGV2 375 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 ST6GALNAC2Q9UJ37 374 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 RPH3AQ9Y2J0 694 aaPredicted RBP9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 ZNF175Q9Y473 711 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 TRAF6Q9Y4K3 522 aa9.85□□□□□ -0.83
VTI1BP3-201ENST00000550220 A0A087WZY1 265 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 IGLV3-32A0A0A0MS00 114 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 SLC22A20A6NK97 555 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 A8MXE2 369 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 KDM4EB2RXH2 506 aaPredicted RBP9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 NME6O75414 186 aaPredicted RBP9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 NGFRP08138 427 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 NUDT17P0C025 328 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 FCGR2AP12318 317 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 HPGDP15428 266 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 FRKP42685 505 aaPredicted RBP9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 B3GALT5-AS1P59052 145 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 IFFO1Q0D2I5 559 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 FOXF2Q12947 444 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 MLC1Q15049 377 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 PRSS53Q2L4Q9 553 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 FAM219BQ5XKK7 198 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 CDC20BQ86Y33 519 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 MISPQ8IVT2 679 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 C4orf33Q8N1A6 199 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 BANPQ8N9N5 519 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 NUP43Q8NFH3 380 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 OR6Y1Q8NGX8 325 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 GFM2Q969S9 779 aaKnown RBP9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 MBD6Q96DN6 1003 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 APOPT1Q96IL0 206 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 EGLN2Q96KS0 407 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 MS4A4EQ96PG1 132 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 PRPF18Q99633 342 aaKnown RBP9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 SLC39A3Q9BRY0 314 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 G6PC3Q9BUM1 346 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 GATA5Q9BWX5 397 aaPredicted RBP9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 GIN1Q9NXP7 522 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 ELOVL5Q9NYP7 299 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 MED11Q9P086 117 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 DNAJC15Q9Y5T4 150 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 AP4B1Q9Y6B7 739 aa9.84□□□□□ -0.83
VTI1BP3-201ENST00000550220 AKAP9Q99996 3911 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 ALG1L2C9J202 215 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 LSM1O15116 133 aaKnown RBP9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 EMC8O43402 210 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 NDUFB5O43674 189 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 LYPLA1O75608 230 aaPredicted RBP9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 NKX2-2O95096 273 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 UTS2O95399 124 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 ANGPTL1O95841 491 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 LINC00032P0C843 101 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 SDC1P18827 310 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 HPCAL1P37235 193 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 RFX3P48380 749 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 PRIM2P49643 509 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 PPP2R2AP63151 447 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 RPL38P63173 70 aaKnown RBP9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 HSPB3Q12988 150 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 SNTB1Q13884 538 aaKnown RBP9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 PDE7AQ13946 482 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 PCLAFQ15004 111 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 RFTN2Q52LD8 501 aaPredicted RBP9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 ZNF551Q7Z340 670 aaPredicted RBP9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 LUZP2Q86TE4 346 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 MARCH3Q86UD3 253 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 TRABD2AQ86V40 505 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 DDIASQ8IXT1 998 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 LINC01560Q8TB33 94 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 ACTRT2Q8TDY3 377 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 SMPDL3BQ92485 455 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 C1GALT1C1Q96EU7 318 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 ALPK1Q96QP1 1244 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 TNFRSF12AQ9NP84 129 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 FANCFQ9NPI8 374 aa9.83□□□□□ -0.84
VTI1BP3-201ENST00000550220 UBQLN4Q9NRR5 601 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms