RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 FAM27E3Q08E93 113 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 C2orf80Q0P641 193 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 GAB1Q13480 694 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 HEPACAMQ14CZ8 416 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 BCL2A1Q16548 175 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 ERCC6LQ2NKX8 1250 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 SPIN4Q56A73 249 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 RPS26P11Q5JNZ5 115 aaPredicted RBP7.65□□□□□ -1.18
USP28-215ENST00000545608 SH2D4BQ5SQS7 431 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 GALNT18Q6P9A2 607 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 KRTAP1-3Q8IUG1 177 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 GRAMD2AQ8IUY3 354 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 SAMD14Q8IZD0 417 aaPredicted RBP7.65□□□□□ -1.18
USP28-215ENST00000545608 FAM9CQ8IZT9 166 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 FADS6Q8N9I5 356 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 OR2M3Q8NG83 312 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 OR4K17Q8NGC6 315 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 STARD4Q96DR4 205 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 L3HYPDHQ96EM0 354 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 BBS4Q96RK4 519 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 RTN4RQ9BZR6 473 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 PIGMQ9H3S5 423 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 GSTO2Q9H4Y5 243 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 GIMAP4Q9NUV9 329 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 SIRT5Q9NXA8 310 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 MED11Q9P086 117 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 DKKL1Q9UK85 242 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 PACSIN3Q9UKS6 424 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 NFU1Q9UMS0 254 aa7.65□□□□□ -1.18
USP28-215ENST00000545608 DOCK7Q96N67 2140 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 EXPH5Q8NEV8 1989 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 H0YC42 278 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 CASKO14936 926 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 RIPK2O43353 540 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 FADS1O60427 444 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 FBXO24O75426 580 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 GOSR1O95249 250 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 JUNP05412 331 aaKnown RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 ENO1P06733 434 aaKnown RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 PEPDP12955 493 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 FOSL1P15407 271 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 ATF4P18848 351 aaPredicted RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 HK1P19367 917 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 DDCP20711 480 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 HOXC12P31275 282 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 EVI2BP34910 448 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 MC3RP41968 323 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 NCBP2P52298 156 aaKnown RBP eCLIP7.64□□□□□ -1.19
USP28-215ENST00000545608 SUCLG1P53597 346 aaKnown RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 DIO3P55073 304 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 TPD52P55327 224 aaPredicted RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 PKNOX1P55347 436 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 DSCR4P56555 118 aaPredicted RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 EEF1A1P68104 462 aaKnown RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 ZNF155Q12901 538 aaPredicted RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 LCP2Q13094 533 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 GLE1Q53GS7 698 aaKnown RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 SPDYAQ5MJ70 313 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 EEF1A1P5Q5VTE0 462 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 FAM71E1Q6IPT2 247 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 VWA1Q6PCB0 445 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 ZNF474Q6S9Z5 364 aaPredicted RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 TMEM107Q6UX40 140 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 P4HA3Q7Z4N8 544 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 SLC22A9Q8IVM8 553 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 UBQLNLQ8IYU4 475 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 CCNYL1Q8N7R7 359 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 MNS1Q8NEH6 495 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 OR5M1Q8NGP8 315 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 CDC26Q8NHZ8 85 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 KIF18AQ8NI77 898 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.64□□□□□ -1.19
USP28-215ENST00000545608 MZB1Q8WU39 189 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 FIG4Q92562 907 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 WFIKKN1Q96NZ8 548 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 SMR3AQ99954 134 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 STMN4Q9H169 189 aaPredicted RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 GLIPR2Q9H4G4 154 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 MID1IP1Q9NPA3 183 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 TAS2R9Q9NYW1 312 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 PPP4R1LQ9P1A2 415 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 EMCNQ9ULC0 261 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 C19orf53Q9UNZ5 99 aaPredicted RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 ZNF337Q9Y3M9 751 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 OR10H1Q9Y4A9 318 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 V9GYY5 206 aaPredicted RBP7.64□□□□□ -1.19
USP28-215ENST00000545608 ZFHX3Q15911 3703 aa7.64□□□□□ -1.19
USP28-215ENST00000545608 NAV3Q8IVL0 2385 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 A0A087WV62 115 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 A0A1W2PPM1 405 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 SLC22A20A6NK97 555 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 G3V2L1 256 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 J3QW42 95 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 UPK1AO00322 258 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 MSTNO14793 375 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 COQ9O75208 318 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 SMNDC1O75940 238 aaKnown RBP eCLIP7.63□□□□□ -1.19
USP28-215ENST00000545608 CRHP06850 196 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 FAM153BP0C7A2 387 aa7.63□□□□□ -1.19
USP28-215ENST00000545608 CPOXP36551 454 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms