RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 PCDHGA10Q9Y5H3 936 aa11.19□□□□□ -0.62
DDX55-210ENST00000543016 DSPP15924 2871 aaKnown RBP11.19□□□□□ -0.62
DDX55-210ENST00000543016 CCT8L1PA6NM43 557 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 SNPHO15079 494 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 TFPTP0C1Z6 253 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 NR2F1P10589 423 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 CYP4B1P13584 511 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 ETFAP13804 333 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 HPGDP15428 266 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 TBXA2RP21731 343 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 SLC6A2P23975 617 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 CASP3P42574 277 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 NUDT2P50583 147 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 CRISP3P54108 245 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 ATP12AP54707 1039 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 LY6DQ14210 128 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 ZSWIM7Q19AV6 140 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 SPATS1Q496A3 300 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 COX20Q5RI15 118 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 SLC6A19Q695T7 634 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 ERICH5Q6P6B1 374 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 FIGNL1Q6PIW4 674 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 MDGA2Q7Z553 956 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 NET1Q7Z628 596 aaPredicted RBP11.18□□□□□ -0.62
DDX55-210ENST00000543016 PACS2Q86VP3 889 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 MISPQ8IVT2 679 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 C11orf65Q8NCR3 313 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 RAB8BQ92930 207 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 EFHD2Q96C19 240 aaPredicted RBP11.18□□□□□ -0.62
DDX55-210ENST00000543016 ECSITQ9BQ95 431 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 FAM173AQ9BQD7 235 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 METTL7AQ9H8H3 244 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 MTHFD2LQ9H903 347 aaPredicted RBP11.18□□□□□ -0.62
DDX55-210ENST00000543016 BCL2L10Q9HD36 194 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 ARL8BQ9NVJ2 186 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 SUCOQ9UBS9 1254 aaKnown RBP11.18□□□□□ -0.62
DDX55-210ENST00000543016 PRDM4Q9UKN5 801 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 L3MBTL1Q9Y468 752 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 WDR45Q9Y484 360 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 MGAQ8IWI9 3026 aa11.18□□□□□ -0.62
DDX55-210ENST00000543016 A0A0G2JPF8 293 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 A0A1W2PQD3 144 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 PRAMEF25A6NGN4 478 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 HNRNPCL2B2RXH8 293 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 HNRNPCL3B7ZW38 293 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 ALG1L2C9J202 215 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 C5orf58C9J3I9 102 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 NPIPB9F8W1W9 429 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 H3BNH8 94 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 SCDO00767 359 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 PEX1O43933 1283 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 FADS1O60427 444 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 HNRNPCL1O60812 293 aaKnown RBP11.17□□□□□ -0.62
DDX55-210ENST00000543016 UTS2O95399 124 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 F10P00742 488 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 IGKV1D-16P01601 117 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 CRYABP02511 175 aaKnown RBP11.17□□□□□ -0.62
DDX55-210ENST00000543016 HNRNPCL4P0DMR1 293 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 ELAVL4P26378 380 aaKnown RBP11.17□□□□□ -0.62
DDX55-210ENST00000543016 EVI2BP34910 448 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 CD97P48960 835 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 CAPRIN1Q14444 709 aaKnown RBP11.17□□□□□ -0.62
DDX55-210ENST00000543016 CYP51A1Q16850 503 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 PLEKHN1Q494U1 663 aaPredicted RBP11.17□□□□□ -0.62
DDX55-210ENST00000543016 FLYWCH1Q4VC44 716 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 GPAT3Q53EU6 434 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 C8orf82Q6P1X6 216 aaPredicted RBP11.17□□□□□ -0.62
DDX55-210ENST00000543016 C16orf89Q6UX73 402 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 PGAM4Q8N0Y7 254 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 ZNF619Q8N2I2 560 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 OR5M3Q8NGP4 307 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 SLC38A5Q8WUX1 472 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 NTNG2Q96CW9 530 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 TMEM41AQ96HV5 264 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 FRMD6Q96NE9 622 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 TBL1XR1Q9BZK7 514 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 IKZF5Q9H5V7 419 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 CACYBPQ9HB71 228 aaKnown RBP11.17□□□□□ -0.62
DDX55-210ENST00000543016 SPAG4Q9NPE6 437 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 KLRF1Q9NZS2 232 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 BOKQ9UMX3 212 aaPredicted RBP11.17□□□□□ -0.62
DDX55-210ENST00000543016 KCNE3Q9Y6H6 103 aa11.17□□□□□ -0.62
DDX55-210ENST00000543016 PIEZO2Q9H5I5 2752 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 SLC28A2O43868 658 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 KIAA0513O60268 411 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 ICOSLGO75144 302 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 ATP5HO75947 161 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 RASAL1O95294 804 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 H6PDO95479 791 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 CCL3P10147 92 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 ARAFP10398 606 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 ETS2P15036 469 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 MSX1P28360 303 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 ADH7P40394 386 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 RFX3P48380 749 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 CASP9P55211 416 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 MTPNP58546 118 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 PSME3P61289 254 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 KCNJ2P63252 427 aa11.16□□□□□ -0.62
DDX55-210ENST00000543016 CBX1P83916 185 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms