RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TMEM154Q6P9G4 183 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 ARHGAP22Q7Z5H3 698 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 PLD3Q8IV08 490 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 KBTBD2Q8IY47 623 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 ZNF595Q8IYB9 648 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 SUN3Q8TAQ9 357 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 GRHL3Q8TE85 626 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 OIT3Q8WWZ8 545 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 THAP4Q8WY91 577 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 TMBIM1Q969X1 311 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 HSH2DQ96JZ2 352 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 TRAPPC9Q96Q05 1148 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 TRNT1Q96Q11 434 aaKnown RBP7.78□□□□□ -1.16
CHD4-208ENST00000540960 ADI1Q9BV57 179 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 ACTRT3Q9BYD9 372 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 LIME1Q9H400 295 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 GLIPR2Q9H4G4 154 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 ZNF696Q9H7X3 374 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 POLE3Q9NRF9 147 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 SLC6A13Q9NSD5 602 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 TUBA8Q9NY65 449 aaPredicted RBP7.78□□□□□ -1.16
CHD4-208ENST00000540960 TNFRSF10DQ9UBN6 386 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 FBXW2Q9UKT8 454 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 CES1P1Q9UKY3 287 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 IFT52Q9Y366 437 aa7.78□□□□□ -1.16
CHD4-208ENST00000540960 SMIM31A0A1B0GVY4 71 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 H0YIG0 161 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 M0QX08 132 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SYT5O00445 386 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 CTSVO60911 334 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 GPR75O95800 540 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 LY6G6DO95868 133 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 EIF2S1P05198 315 aaKnown RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 INHBBP09529 407 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 TFPTP0C1Z6 253 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SLC35E2P0CK97 266 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 ETFAP13804 333 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 EDN3P14138 238 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 MYF6P23409 242 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 CERS1P27544 350 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 TTKP33981 857 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 IFNGR2P38484 337 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 TPD52P55327 224 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 LIM2P55344 173 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 PCBP3P57721 371 aaKnown RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 ESRRGP62508 458 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 HSD11B2P80365 405 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SQSTM1Q13501 440 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SERTAD2Q14140 314 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 ZNHIT3Q15649 155 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 KCTD21Q4G0X4 260 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 DEFB134Q4QY38 66 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 FAM69BQ5VUD6 431 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 FAM219BQ5XKK7 198 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 HMBOX1Q6NT76 420 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 FAM199XQ6PEV8 388 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 WDR74Q6RFH5 385 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 ENPP6Q6UWR7 440 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 ZNF793Q6ZN11 406 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 BPHLQ86WA6 291 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 ZNF761Q86XN6 746 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 LGI4Q8N135 537 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 DNAJC22Q8N4W6 341 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 NFKBIDQ8NI38 313 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SPPL2AQ8TCT8 520 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 ZNF675Q8TD23 568 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 MAGEE2Q8TD90 523 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 ADAMTS15Q8TE58 950 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 ELP4Q96EB1 424 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 TPD52L3Q96J77 140 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 C18orf12Q96KH6 178 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 MS4A4EQ96PG1 132 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 PIP5K1AQ99755 562 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 APOL4Q9BPW4 351 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SPOCK3Q9BQ16 436 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SORBS1Q9BX66 1292 aaKnown RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 MRPS26Q9BYN8 205 aaKnown RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 POLR2J2Q9GZM3 115 aaKnown RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 POLR2J3Q9H1A7 115 aaKnown RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 KLHL31Q9H511 634 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 CXorf36Q9H7Y0 433 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 ZBTB20Q9HC78 741 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 DDX18Q9NVP1 670 aaKnown RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 IRAK4Q9NWZ3 460 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 TEX10Q9NXF1 929 aaPredicted RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 GPR83Q9NYM4 423 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 KIF17Q9P2E2 1029 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 TRPC4Q9UBN4 977 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SERTAD3Q9UJW9 196 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 TMCC3Q9ULS5 477 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 SAMHD1Q9Y3Z3 626 aaKnown RBP7.77□□□□□ -1.17
CHD4-208ENST00000540960 ATG4BQ9Y4P1 393 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 CSAG2Q9Y5P2 127 aa7.77□□□□□ -1.17
CHD4-208ENST00000540960 A0A087WXM4 84 aa7.76□□□□□ -1.17
CHD4-208ENST00000540960 CCL21O00585 134 aa7.76□□□□□ -1.17
CHD4-208ENST00000540960 EI24O14681 340 aa7.76□□□□□ -1.17
CHD4-208ENST00000540960 ACOX3O15254 700 aa7.76□□□□□ -1.17
CHD4-208ENST00000540960 PLOD3O60568 738 aa7.76□□□□□ -1.17
CHD4-208ENST00000540960 MRPS14O60783 128 aaKnown RBP7.76□□□□□ -1.17
CHD4-208ENST00000540960 CTNSO60931 367 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms