RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 FAM60AQ9NP50 221 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 RPL36Q9Y3U8 105 aaKnown RBP15.79■□□□□ 0.12
USP28-208ENST00000540438 FANCMQ8IYD8 2048 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 TRAV27A0A087WT01 109 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 A0A1W2PRQ8 180 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 H3BSH0 61 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 SNPHO15079 494 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 AQP9O43315 295 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 SOX6P35712 828 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 SLC15A1P46059 708 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 RPS7P62081 194 aaKnown RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 CCDC85BQ15834 202 aaPredicted RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 PUS10Q3MIT2 529 aaKnown RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 GDF7Q7Z4P5 450 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 CPOQ8IVL8 374 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 RSC1A1Q92681 617 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 PRRC1Q96M27 445 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 TRNT1Q96Q11 434 aaKnown RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 NELL2Q99435 816 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 TRIM45Q9H8W5 580 aaPredicted RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 HCN3Q9P1Z3 774 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 KCNE5Q9UJ90 142 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 TTC36A6NLP5 189 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 B4DGG1 531 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 RDH16O75452 317 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 SLC9A3P48764 834 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 FAM27D1Q5T7N8 215 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 ZNF425Q6IV72 752 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 SLC27A4Q6P1M0 643 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 PLBD1Q6P4A8 553 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 FRRS1Q6ZNA5 592 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 NRARPQ7Z6K4 114 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 NRROSQ86YC3 692 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 GATSQ8NAP1 163 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 OR9A4Q8NGU2 314 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 GIMAP5Q96F15 307 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 ISG20L2Q9H9L3 353 aaKnown RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 CHCHD3Q9NX63 227 aaKnown RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 NLGN3Q9NZ94 848 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 KCMF1Q9P0J7 381 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 MED12Q93074 2177 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 MED26O95402 600 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 TMED10P49755 219 aaKnown RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 OTPQ5XKR4 325 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 FCRL6Q6DN72 434 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 PAQR7Q86WK9 346 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 LRRC25Q8N386 305 aaPredicted RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 MFSD9Q8NBP5 474 aa15.78■□□□□ 0.12
USP28-208ENST00000540438 LSM2Q9Y333 95 aaKnown RBP15.78■□□□□ 0.12
USP28-208ENST00000540438 URB1O60287 2271 aaKnown RBP15.77■□□□□ 0.12
USP28-208ENST00000540438 SCG5P05408 212 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 ACP2P11117 423 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 MYL12AP19105 171 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 GABRA3P34903 492 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 CDH11P55287 796 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 FOXL2P58012 376 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 ZNF836Q6ZNA1 936 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 RTL10Q7L3V2 364 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 TAF8Q7Z7C8 310 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 NANOGP1Q8N7R0 232 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 OR4K14Q8NGD5 310 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 SLC41A3Q96GZ6 507 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 OR2A5Q96R48 311 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 FUZQ9BT04 418 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 KIR3DX1Q9H7L2 352 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 SMURF1Q9HCE7 757 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 PALMDQ9NP74 551 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 TXNL4BQ9NX01 149 aaKnown RBP15.77■□□□□ 0.12
USP28-208ENST00000540438 ACTR10Q9NZ32 417 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 SNX7Q9UNH6 387 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 B3GNT3Q9Y2A9 372 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 RP1P56715 2156 aa15.77■□□□□ 0.12
USP28-208ENST00000540438 MUC22E2RYF6 1773 aaPredicted RBP15.77■□□□□ 0.12
USP28-208ENST00000540438 MTNR1AP48039 350 aa15.77■□□□□ 0.11
USP28-208ENST00000540438 SRP54P61011 504 aaKnown RBP15.77■□□□□ 0.11
USP28-208ENST00000540438 FAM214AQ32MH5 1076 aa15.77■□□□□ 0.11
USP28-208ENST00000540438 TMEM35AQ53FP2 167 aa15.77■□□□□ 0.11
USP28-208ENST00000540438 MFSD12Q6NUT3 480 aa15.77■□□□□ 0.11
USP28-208ENST00000540438 IL20RBQ6UXL0 311 aa15.77■□□□□ 0.11
USP28-208ENST00000540438 CRELD1Q96HD1 420 aa15.77■□□□□ 0.11
USP28-208ENST00000540438 C10orf90Q96M02 699 aa15.77■□□□□ 0.11
USP28-208ENST00000540438 TAS2R7Q9NYW3 318 aa15.77■□□□□ 0.11
USP28-208ENST00000540438 IMPA2O14732 288 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 TUBA1BP68363 451 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 RGS1Q08116 209 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 RNASE12Q5GAN4 147 aaKnown RBP15.76■□□□□ 0.11
USP28-208ENST00000540438 TUBA1AQ71U36 451 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 UBE2Q1Q7Z7E8 422 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 KLBQ86Z14 1044 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 AVL9Q8NBF6 648 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 WDR92Q96MX6 357 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SECISBP2Q96T21 854 aaKnown RBP15.76■□□□□ 0.11
USP28-208ENST00000540438 ADAM11O75078 769 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SMSP52788 366 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 FABP5Q01469 135 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SELENBP1Q13228 472 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 FAM131AQ6UXB0 335 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 RPTNQ6XPR3 784 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 MND1Q9BWT6 205 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms