RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	CCDC91	Q7Z6B0	441 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	MYLK4	Q86YV6	388 aa	Predicted RBP	11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	UBQLNL	Q8IYU4	475 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	SPATA6L	Q8N4H0	392 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	METTL25	Q8N6Q8	603 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	ANKRD42	Q8N9B4	389 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	ADCY4	Q8NFM4	1077 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	OR4K17	Q8NGC6	315 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	TCP10L	Q8TDR4	215 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	EXT2	Q93063	718 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	UBXN10	Q96LJ8	280 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	BTBD9	Q96Q07	612 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	GPR22	Q99680	433 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	PINK1	Q9BXM7	581 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	BRINP2	Q9C0B6	783 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	PLSCR4	Q9NRQ2	329 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	MAT2B	Q9NZL9	334 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	EHD3	Q9NZN3	535 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	BCAP29	Q9UHQ4	241 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	ADAM29	Q9UKF5	820 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	GRID1	Q9ULK0	1009 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	SNX8	Q9Y5X2	465 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	CR1	P17927	2039 aa		11.17	□□□□□ -0.62
CAPN1-223	ENST00000533079	C1orf226	A1L170	272 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	SUPT3H	B4E1H0	165 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	KLF11	O14901	512 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	PHGDH	O43175	533 aa	Known RBP	11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	DLX3	O60479	287 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	ZIC3	O60481	467 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	GUCY1B2	O75343	617 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	SUPT3H	O75486	399 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	PLAU	P00749	431 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	COL6A2	P12110	1019 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	TAC1	P20366	129 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	KRT20	P35900	424 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	ACVR1B	P36896	505 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	PIK3CG	P48736	1102 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	NEK2	P51955	445 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	MRPS22	P82650	360 aa	Known RBP	11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	NRF1	Q16656	503 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	EXOC3L2	Q2M3D2	409 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	RAET1L	Q5VY80	246 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	ANKRD34A	Q69YU3	496 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	SLC48A1	Q6P1K1	146 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	STAC2	Q6ZMT1	411 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	BEND4	Q6ZU67	534 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	PAGE2	Q7Z2X7	111 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	CPLX4	Q7Z7G2	160 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	FNDC9	Q8TBE3	224 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	RAB3IL1	Q8TBN0	382 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	ERP27	Q96DN0	273 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	GMPPA	Q96IJ6	420 aa	Predicted RBP	11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	SERPINI1	Q99574	410 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	TACO1	Q9BSH4	297 aa	Known RBP	11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	ACTR6	Q9GZN1	396 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	NSRP1	Q9H0G5	558 aa	Known RBP	11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	CAB39L	Q9H9S4	337 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	GPR52	Q9Y2T5	361 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	RNF115	Q9Y4L5	304 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	ANGPTL3	Q9Y5C1	460 aa		11.16	□□□□□ -0.62
CAPN1-223	ENST00000533079	CCDC189	A1A4V9	331 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	SYCE1L	A8MT33	242 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	SS18L1	O75177	396 aa	Predicted RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	GLRA3	O75311	464 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	BCAS2	O75934	225 aa	Predicted RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	CBX7	O95931	251 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	FES	P07332	822 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	DANCR	P0C864	163 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	CSNK2A2	P19784	350 aa	Predicted RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	PSMB1	P20618	241 aa	Known RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	IL11	P20809	199 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	IL12B	P29460	328 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	SERPINB8	P50452	374 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	RAB10	P61026	200 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	MGAT2	Q10469	447 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	GKAP1	Q5VSY0	366 aa	Predicted RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	STK32C	Q86UX6	486 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	WFDC8	Q8IUA0	241 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	LRRC34	Q8IZ02	419 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	TEX9	Q8N6V9	391 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	FADS6	Q8N9I5	356 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	OR52R1	Q8NGF1	315 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	WDR20	Q8TBZ3	569 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	TMBIM1	Q969X1	311 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	HS6ST2	Q96MM7	605 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	ATOH8	Q96SQ7	321 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	C19orf24	Q9BVV8	132 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	GRIP2	Q9C0E4	1043 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	IQCG	Q9H095	443 aa	Known RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	ESRP2	Q9H6T0	727 aa	Known RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	ALG9	Q9H6U8	611 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	NMRAL1	Q9HBL8	299 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	NGB	Q9NPG2	151 aa		11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	PAQR5	Q9NXK6	330 aa	Predicted RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	GPR55	Q9Y2T6	319 aa	Predicted RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079	MAGED1	Q9Y5V3	778 aa	Predicted RBP	11.15	□□□□□ -0.62
CAPN1-223	ENST00000533079		A0A1W2PP18	115 aa		11.14	□□□□□ -0.63
CAPN1-223	ENST00000533079	GOLGA8R	I6L899	631 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms