RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 STMN3Q9NZ72 180 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 PLEKHA6Q9Y2H5 1048 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 HBS1LQ9Y450 684 aaKnown RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 MRPS18BQ9Y676 258 aaKnown RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 A0A087X002 238 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 A0A0J9YWU9 116 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 BICDL2A1A5D9 508 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 ZNF840PA6NDX5 716 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 H0YIG0 161 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 CCL24O00175 119 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 HIP1O00291 1037 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 CCL21O00585 134 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 PNPP00491 289 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 OAS1P00973 400 aaKnown RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 SERPING1P05155 500 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 MBL2P11226 248 aaPredicted RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 ODC1P11926 461 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 VCLP18206 1134 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 HLA-DPA1P20036 260 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 F8A1P23610 371 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 HNRNPH3P31942 346 aaKnown RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 ATP6V1E1P36543 226 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 OR3A1P47881 315 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 CCL11P51671 97 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 NME5P56597 212 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 KCNJ10P78508 379 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 KLC1Q07866 573 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 LGALS3BPQ08380 585 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 RPS6KA1Q15418 735 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 PHKG1Q16816 387 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 HFEQ30201 348 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 CCDC92Q53HC0 331 aaPredicted RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 OR4A47Q6IF82 309 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 MIER3Q7Z3K6 550 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 PHLDB2Q86SQ0 1253 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 RTN4RL2Q86UN3 420 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 ZSCAN30Q86W11 494 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 AMIGO1Q86WK6 493 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 HIPK1Q86Z02 1210 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 CNTN4Q8IWV2 1026 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 AQP12AQ8IXF9 295 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 THEM5Q8N1Q8 247 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 OR6C4Q8NGE1 309 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 PHLDA1Q8WV24 401 aaPredicted RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 CRYGNQ8WXF5 182 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 ART4Q93070 314 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 C18orf25Q96B23 403 aaPredicted RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 RMND5BQ96G75 393 aaPredicted RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 POM121L2Q96KW2 1035 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 GDAP1L1Q96MZ0 367 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 PANX3Q96QZ0 392 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 MAP3K3Q99759 626 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 OMDQ99983 421 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 TCHPQ9BT92 498 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 CCDC94Q9BW85 323 aaPredicted RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 TEKT3Q9BXF9 490 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 CALN1Q9BXU9 219 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 OSBPL8Q9BZF1 889 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 TRIM15Q9C019 465 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 MIS12Q9H081 205 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 LIME1Q9H400 295 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 PRSS16Q9NQE7 514 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 SDR39U1Q9NRG7 319 aaPredicted RBP3.3□□□□□ -1.88
CD44-235ENST00000532339 P4HTMQ9NXG6 502 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 CACNG5Q9UF02 275 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 KCNN3Q9UGI6 736 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 STUB1Q9UNE7 303 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 KLK4Q9Y5K2 254 aa3.3□□□□□ -1.88
CD44-235ENST00000532339 SACSQ9NZJ4 4579 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 TDRD6O60522 2096 aaKnown RBP3.29□□□□□ -1.88
CD44-235ENST00000532339 TRGV8A0A0C4DH27 118 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 A0A0U1RQS6 177 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 ILVBLA1L0T0 632 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 C17orf105B2RV13 164 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 PRSS46E5RG02 174 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 O00370 1275 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 PGRMC2O15173 223 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 SLC22A2O15244 555 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 GLCEO94923 617 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 VENTXO95231 258 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 PIGNO95427 931 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 EML2O95834 649 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 CLPTM1O96005 669 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 C8orf89P0DMQ9 161 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 IGHV4-31P0DP07 118 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 STMN1P16949 149 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 GOT1P17174 413 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 EFNA1P20827 205 aaPredicted RBP3.29□□□□□ -1.88
CD44-235ENST00000532339 CDH3P22223 829 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 GLRA2P23416 452 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 ARL2P36404 184 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 DLSTP36957 453 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 CA7P43166 264 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 IER3P46695 156 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 CDH11P55287 796 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 KIAA1024LP59773 190 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 LMO4P61968 165 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 CACNG1Q06432 222 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 NPRL3Q12980 569 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 SYCP1Q15431 976 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms