RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 AHCTF1Q8WYP5 2266 aa19.64■□□□□ 0.74
VPS28-212ENST00000530836 IGF2RP11717 2491 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 IDSB3KWA1 339 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 DENRO43583 198 aaKnown RBP19.64■□□□□ 0.73
VPS28-212ENST00000530836 FCMRO60667 390 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 IGKV3-11P04433 115 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 DBIP07108 87 aaKnown RBP19.64■□□□□ 0.73
VPS28-212ENST00000530836 CD63P08962 238 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 LIPCP11150 499 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 EIPR1Q53HC9 387 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 TSEN54Q7Z6J9 526 aaKnown RBP19.64■□□□□ 0.73
VPS28-212ENST00000530836 CARM1Q86X55 608 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 PRSS58Q8IYP2 241 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 NLGN4XQ8N0W4 816 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 GALNT6Q8NCL4 622 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 NLGN4YQ8NFZ3 816 aaPredicted RBP19.64■□□□□ 0.73
VPS28-212ENST00000530836 SLC2A12Q8TD20 617 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 ZCCHC14Q8WYQ9 949 aaKnown RBP19.64■□□□□ 0.73
VPS28-212ENST00000530836 NR4A3Q92570 626 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 GABARAPL1Q9H0R8 117 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 ARMC7Q9H6L4 198 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 GPN3Q9UHW5 284 aaPredicted RBP19.64■□□□□ 0.73
VPS28-212ENST00000530836 MKLN1Q9UL63 735 aa19.64■□□□□ 0.73
VPS28-212ENST00000530836 DMXL2Q8TDJ6 3036 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 APC2O95996 2303 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 TEX51A0A1B0GUA7 166 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 AGAP5A6NIR3 686 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 OR6C76A6NM76 312 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 TAF4O00268 1085 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 KIAA0513O60268 411 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 RAD1O60671 282 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 KCNK2O95069 426 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 DDAH2O95865 285 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 TNFRSF1BP20333 461 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 SMIM11AP58511 58 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 PSPHP78330 225 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 EPS8Q12929 822 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 MED21Q13503 144 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 OTUD3Q5T2D3 398 aaPredicted RBP19.63■□□□□ 0.73
VPS28-212ENST00000530836 MRPL14Q6P1L8 145 aaKnown RBP19.63■□□□□ 0.73
VPS28-212ENST00000530836 ESX1Q8N693 406 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 MAGEE2Q8TD90 523 aaPredicted RBP19.63■□□□□ 0.73
VPS28-212ENST00000530836 ZNF721Q8TF20 911 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 NKD1Q969G9 470 aa19.63■□□□□ 0.73
VPS28-212ENST00000530836 SMPD3Q9NY59 655 aaPredicted RBP19.63■□□□□ 0.73
VPS28-212ENST00000530836 C19orf25Q9UFG5 118 aaPredicted RBP19.63■□□□□ 0.73
VPS28-212ENST00000530836 C7orf72A4D263 438 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 PRAMEF25A6NGN4 478 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 ALOX12BO75342 701 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 DIRAS1O95057 198 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 CLPSP04118 112 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 ALPLP05186 524 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 IL7RP16871 459 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 RPS4Y1P22090 263 aaKnown RBP19.62■□□□□ 0.73
VPS28-212ENST00000530836 RRM2P31350 389 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 PIGAP37287 484 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 PPICP45877 212 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 EMP2P54851 167 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 ZSWIM7Q19AV6 140 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 CYP27C1Q4G0S4 372 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 LIN52Q52LA3 116 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 OIT3Q8WWZ8 545 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 OR8D2Q9GZM6 311 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 PADI1Q9ULC6 663 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 GPR55Q9Y2T6 319 aaPredicted RBP19.62■□□□□ 0.73
VPS28-212ENST00000530836 AP4B1Q9Y6B7 739 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 U3KQV3 271 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 ACACBO00763 2458 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 C9J4A7 227 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 TNFRSF11BO00300 401 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 PCDH17O14917 1159 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 ZIC2O95409 532 aaPredicted RBP19.62■□□□□ 0.73
VPS28-212ENST00000530836 CCNYL3P0C7X3 344 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 CT45A8P0DMV1 189 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 CT45A9P0DMV2 189 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 EIF2S3P41091 472 aaKnown RBP19.62■□□□□ 0.73
VPS28-212ENST00000530836 EFNA3P52797 238 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 HMGA2P52926 109 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 IST1P53990 364 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 PSMD4P55036 377 aaKnown RBP19.62■□□□□ 0.73
VPS28-212ENST00000530836 PPP2R2BQ00005 443 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 CLN3Q13286 438 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 TGIF1Q15583 401 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 GPR68Q15743 365 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 RFX4Q33E94 735 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 CT45A2Q5DJT8 189 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 ZNF605Q86T29 641 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 OR1N1Q8NGS0 311 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 KCNE4Q8WWG9 221 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 RMND5BQ96G75 393 aaPredicted RBP19.62■□□□□ 0.73
VPS28-212ENST00000530836 ZNF570Q96NI8 536 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 ITPAQ9BY32 194 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 DPH1Q9BZG8 443 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 KCND3Q9UK17 655 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 MRTO4Q9UKD2 239 aaKnown RBP19.62■□□□□ 0.73
VPS28-212ENST00000530836 CBLCQ9ULV8 474 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 ZNF443Q9Y2A4 671 aaPredicted RBP19.62■□□□□ 0.73
VPS28-212ENST00000530836 RAXQ9Y2V3 346 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 OR10H1Q9Y4A9 318 aa19.62■□□□□ 0.73
VPS28-212ENST00000530836 FER1L5A0AVI2 2057 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms