RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ATF7IP2Q5U623 682 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 ARMCX5Q6P1M9 558 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 CYS1Q717R9 158 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 TMEM17Q86X19 198 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 OR4Q3Q8NH05 313 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 RFESDQ8TAC1 157 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 M1APQ8TC57 530 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 WBP1Q96G27 269 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 LINC00479Q96M42 142 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 AGAP3Q96P47 875 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 POLR3FQ9H1D9 316 aaPredicted RBP5.94□□□□□ -1.46
NUP54-215ENST00000514313 CYTH4Q9UIA0 394 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 METP08581 1390 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 TRBV7-9A0A0J9YWB2 115 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 ZSCAN5BA6NJL1 495 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 PRR23D1E9PI22 279 aaPredicted RBP5.93□□□□□ -1.46
NUP54-215ENST00000514313 B3GAT3O94766 335 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 ADCY5O95622 1261 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 IGF1P05019 195 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 PRR23D2P0DMB1 279 aaPredicted RBP5.93□□□□□ -1.46
NUP54-215ENST00000514313 H2AFXP16104 143 aaPredicted RBP5.93□□□□□ -1.46
NUP54-215ENST00000514313 PBLDP30039 288 aaPredicted RBP5.93□□□□□ -1.46
NUP54-215ENST00000514313 RPL4P36578 427 aaKnown RBP5.93□□□□□ -1.46
NUP54-215ENST00000514313 PRELPP51888 382 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 EWSR1Q01844 656 aaKnown RBP eCLIP5.93□□□□□ -1.46
NUP54-215ENST00000514313 ATXN7L3Q14CW9 347 aaPredicted RBP5.93□□□□□ -1.46
NUP54-215ENST00000514313 PMF1Q6P1K2 205 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 ANKFN1Q8N957 763 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 WDSUB1Q8N9V3 476 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 LRRC61Q9BV99 259 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 TRIM6Q9C030 488 aaPredicted RBP5.93□□□□□ -1.46
NUP54-215ENST00000514313 RAB18Q9NP72 206 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 MEPEQ9NQ76 525 aaPredicted RBP5.93□□□□□ -1.46
NUP54-215ENST00000514313 COX16Q9P0S2 106 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 GALPQ9UBC7 116 aa5.93□□□□□ -1.46
NUP54-215ENST00000514313 PTCH1Q13635 1447 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 IGHV3OR16-12A0A075B7B8 117 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 A0A1B0GTH9 108 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 PALMO75781 387 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 SNX4O95219 450 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 DPEP1P16444 411 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 HOXB6P17509 224 aaKnown RBP5.92□□□□□ -1.46
NUP54-215ENST00000514313 EMDP50402 254 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 ARHGDIAP52565 204 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 PLA2G16P53816 162 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 TMEM44Q2T9K0 475 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 VWA2Q5GFL6 755 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 LRRC70Q7Z2Q7 622 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 CEACAM19Q7Z692 300 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 PHC2Q8IXK0 858 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 LRRC43Q8N309 656 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 C4orf32Q8N8J7 132 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 BEST4Q8NFU0 473 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 CNIH3Q8TBE1 160 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 FAM3CQ92520 227 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 IWS1Q96ST2 819 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 SECISBP2Q96T21 854 aaKnown RBP5.92□□□□□ -1.46
NUP54-215ENST00000514313 OMDQ99983 421 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 SLC30A2Q9BRI3 323 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 FEM1AQ9BSK4 669 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 VCX2Q9H322 139 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 MRPL39Q9NYK5 338 aaKnown RBP5.92□□□□□ -1.46
NUP54-215ENST00000514313 GNG12Q9UBI6 72 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 RNF24Q9Y225 148 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 SPACA6W5XKT8 324 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 GRIN2DO15399 1336 aa5.92□□□□□ -1.46
NUP54-215ENST00000514313 NDUFAF8A1L188 74 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 TRABD2BA6NFA1 517 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 SNNO75324 88 aaPredicted RBP5.91□□□□□ -1.46
NUP54-215ENST00000514313 HMMRO75330 724 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 TBXA2RP21731 343 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 BDKRB1P46663 353 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 DHPSP49366 369 aaPredicted RBP5.91□□□□□ -1.46
NUP54-215ENST00000514313 NOVA1P51513 510 aaKnown RBP5.91□□□□□ -1.46
NUP54-215ENST00000514313 NTHL1P78549 312 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 ELAVL2Q12926 359 aaKnown RBP5.91□□□□□ -1.46
NUP54-215ENST00000514313 ADAM5Q6NVV9 412 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 SCYL2Q6P3W7 929 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 DOK6Q6PKX4 331 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 ZNF683Q8IZ20 524 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 ARL14Q8N4G2 192 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 EIF1ADQ8N9N8 165 aaKnown RBP5.91□□□□□ -1.46
NUP54-215ENST00000514313 TRMT10AQ8TBZ6 339 aaKnown RBP5.91□□□□□ -1.46
NUP54-215ENST00000514313 MYLPFQ96A32 169 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 RIT2Q99578 217 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 LRRC40Q9H9A6 602 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 RAI14Q9P0K7 980 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 BARX2Q9UMQ3 279 aaPredicted RBP5.91□□□□□ -1.46
NUP54-215ENST00000514313 CLEC4AQ9UMR7 237 aa5.91□□□□□ -1.46
NUP54-215ENST00000514313 MRPL11Q9Y3B7 192 aaKnown RBP5.91□□□□□ -1.46
NUP54-215ENST00000514313 H7C423 109 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 BCKDHAP12694 445 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 SDC1P18827 310 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 TPSB2P20231 275 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 LRRC74AQ0VAA2 488 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 CYLC2Q14093 348 aaPredicted RBP5.9□□□□□ -1.46
NUP54-215ENST00000514313 PDK3Q15120 406 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 TPSAB1Q15661 275 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 C10orf120Q5SQS8 335 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 ACSM5Q6NUN0 579 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms