RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 NAA10P41227 235 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 DIO3P55073 304 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 POM121L1PQ3SYA9 428 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 SIRPB2Q5JXA9 342 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 UBE2NLQ5JXB2 153 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 PRAMEF18Q5VWM3 479 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 FIGNL1Q6PIW4 674 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 TMPPEQ6ZT21 453 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 VASH1Q7L8A9 365 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 OR13C4Q8NGS5 318 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 SMPDL3BQ92485 455 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 GCDHQ92947 438 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF251Q9BRH9 671 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 GORASP2Q9H8Y8 452 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ERVMER34-1Q9H9K5 563 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 KLRF1Q9NZS2 232 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 TMEM82A0PJX8 343 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 VEGFDO43915 354 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 CRHBPP24387 322 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 RPS19P39019 145 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ETV4P43268 484 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 OR4D2P58180 307 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 SORDQ00796 357 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 GPR176Q14439 515 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 TMEM225Q6GV28 225 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ALKBH2Q6NS38 261 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 RPL22L1Q6P5R6 122 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 ALKAL2Q6UX46 152 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 LARP4Q71RC2 724 aaKnown RBP eCLIP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 C6orf120Q7Z4R8 191 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 GIMAP1Q8WWP7 306 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 DPF1Q92782 380 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 FGGYQ96C11 551 aa10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 TRMT2BQ96GJ1 504 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-217ENST00000512946 CCL22O00626 93 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 PMS2P2O95744 297 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 HLA-DQB2P05538 268 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 FGF7P21781 194 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 ACSM1Q08AH1 577 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 APOFQ13790 326 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 LAPTM4AQ15012 233 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 ABHD15Q6UXT9 468 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SERPINA12Q8IW75 414 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 LDAHQ9H6V9 325 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC17A6Q9P2U8 582 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 RHCGQ9UBD6 479 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 RNF11Q9Y3C5 154 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 MYOCOSA0A1B0GUC4 107 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 TRIM77I1YAP6 450 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 ADAM23O75077 832 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 OR2F2O95006 317 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 RAB5AP20339 215 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 OR1E2P47887 323 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 PSMD8P48556 350 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 RHBDL3P58872 404 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 OR2F1Q13607 317 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 MPEG1Q2M385 716 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 GRAMD2AQ8IUY3 354 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 ENTHD1Q8IYW4 607 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC5A8Q8N695 610 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 TMIGD2Q96BF3 282 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 C14orf79Q96F83 325 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 GPR88Q9GZN0 384 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SOX17Q9H6I2 414 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 MTHFD2LQ9H903 347 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 MED17Q9NVC6 651 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 PURGQ9UJV8 347 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 PCDHA2Q9Y5H9 948 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 CIDEAO60543 219 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC5A2P31639 672 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 BEX3Q00994 111 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 MZT1Q08AG7 82 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SNTB1Q13884 538 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 NRARPQ7Z6K4 114 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 OR4C5Q8NGB2 326 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 CPT1CQ8TCG5 803 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SLAMF9Q96A28 289 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 L3HYPDHQ96EM0 354 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 ISYNA1Q9NPH2 558 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 STRAPQ9Y3F4 350 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 A8MVM7 634 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 FABP7O15540 132 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 AP1G1O43747 822 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SYNGR4O95473 234 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 ITGB2P05107 769 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 C1GALT1C1LP0DN25 315 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 GJA5P36382 358 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 BDKRB1P46663 353 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 PSMB3P49720 205 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 TAF9Q16594 264 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 AMZ1Q400G9 498 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 HEPHL1Q6MZM0 1159 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 OR51Q1Q8NH59 317 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SYNPRQ8TBG9 265 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 C16orf78Q8WTQ4 265 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 TEPSINQ96N21 525 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC39A9Q9NUM3 307 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 RNF150Q9ULK6 438 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC6A14Q9UN76 642 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms