RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, human

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNB1-208	ENST00000504788	DUXA	A6NLW8	204 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	ERVH48-1	M5A8F1	160 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	AIM2	O14862	343 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	KIAA0513	O60268	411 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	ICOSLG	O75144	302 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SEMA7A	O75326	666 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	TRIM3	O75382	744 aa	Predicted RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	F10	P00742	488 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	CYP4B1	P13584	511 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	DDX5	P17844	614 aa	Known RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	CALB2	P22676	271 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	MST1	P26927	711 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	CASP3	P42574	277 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	PRIM2	P49643	509 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SLC25A3	Q00325	362 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	RHD	Q02161	417 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	CHRNE	Q04844	493 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	KCNAB2	Q13303	367 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	NFYC	Q13952	458 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	CEACAM7	Q14002	265 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	MAPRE2	Q15555	327 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	CD226	Q15762	336 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	ZNF141	Q15928	474 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	HYAL4	Q2M3T9	481 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	KLHL26	Q53HC5	615 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	RNFT1	Q5M7Z0	435 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	DCST2	Q5T1A1	773 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	ZNF324B	Q6AW86	544 aa	Predicted RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	FIGNL1	Q6PIW4	674 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	LINC00696	Q6ZRV3	163 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	ASRGL1	Q7L266	308 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SLC29A4	Q7RTT9	530 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	TSEN54	Q7Z6J9	526 aa	Known RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	LSR	Q86X29	649 aa	Predicted RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	PTRH1	Q86Y79	214 aa	Known RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	CHERP	Q8IWX8	916 aa	Known RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	PGAM4	Q8N0Y7	254 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SLC34A3	Q8N130	599 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	TRIML2	Q8N7C3	387 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	WDSUB1	Q8N9V3	476 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SPPL2A	Q8TCT8	520 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SLC9A6	Q92581	669 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	UTP4	Q969X6	686 aa	Known RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	EFHD2	Q96C19	240 aa	Predicted RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	OMA1	Q96E52	524 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	NSL1	Q96IY1	281 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SLC35G5	Q96KT7	338 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	TRNT1	Q96Q11	434 aa	Known RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	TAAR6	Q96RI8	345 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	ADO	Q96SZ5	270 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SECISBP2	Q96T21	854 aa	Known RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	TREX2	Q9BQ50	279 aa	Predicted RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	ANGPTL4	Q9BY76	406 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	QRSL1	Q9H0R6	528 aa	Known RBP	4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	EFCAB1	Q9HAE3	211 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	PRM3	Q9NNZ6	103 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	A4GALT	Q9NPC4	353 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	4.53	□□□□□ -1.68	3e-8	■□□□□ 8.3
LMNB1-208	ENST00000504788	ANKRD10	Q9NXR5	420 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	PCDHGB4	Q9UN71	923 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	NTNG1	Q9Y2I2	539 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	PCDHGA10	Q9Y5H3	936 aa		4.53	□□□□□ -1.68
LMNB1-208	ENST00000504788	KIAA1549	Q9HCM3	1950 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	GTF3C1	Q12789	2109 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	POLE	Q07864	2286 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	IGLV3-32	A0A0A0MS00	114 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	NPIPA5	A0A0B4J1W7	369 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788		A0A1W2PQD3	144 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	AGAP5	A6NIR3	686 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	CLDN24	A6NM45	220 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	ALG1L2	C9J202	215 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	NPIPA7	E9PJI5	369 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	ETV2	O00321	342 aa	Predicted RBP	4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	OIP5	O43482	229 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	DYRK3	O43781	588 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	NME2P1	O60361	137 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	TPST2	O60704	377 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	C1QL1	O75973	258 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	GLS	O94925	669 aa	Predicted RBP	4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	SOX30	O94993	753 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	PGM3	O95394	542 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	H6PD	O95479	791 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	KRT75	O95678	551 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	OXSR1	O95747	527 aa	Predicted RBP	4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	ALOX5	P09917	674 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	NPIPA8	P0DM63	369 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	HSD17B1	P14061	328 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	TBXA2R	P21731	343 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	NME2	P22392	152 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	SOAT1	P35610	550 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	ADH7	P40394	386 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	CYB561	P49447	251 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	GSK3B	P49841	420 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	NUDT2	P50583	147 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	SSR4	P51571	173 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	SLC7A2	P52569	658 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	DLX5	P56178	289 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	DSTN	P60981	165 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	PSME3	P61289	254 aa		4.52	□□□□□ -1.69
LMNB1-208	ENST00000504788	NCALD	P61601	193 aa		4.52	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms