RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 HACD2Q6Y1H2 254 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 GATAD2BQ8WXI9 593 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 MYRFLQ96LU7 910 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 GON7Q9BXV9 100 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ERVK-19Q9WJR5 959 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 DDCP20711 480 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 GDF1P27539 372 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 OPRL1P41146 370 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ENPP6Q6UWR7 440 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 KLBQ86Z14 1044 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ACOT4Q8N9L9 421 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 CHPT1Q8WUD6 406 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ATOH1Q92858 354 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 PTERQ96BW5 349 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 KCNIP1Q9NZI2 227 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 FBXL3Q9UKT7 428 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 FOSL1P15407 271 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 HOXD9P28356 352 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF140P52738 457 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 EIF2S3LQ2VIR3 472 aaKnown RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 TMEM69Q5SWH9 247 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 B3GNT9Q6UX72 402 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 TRAPPC6BQ86SZ2 158 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 POGLUT1Q8NBL1 392 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 VN1R2Q8NFZ6 395 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 OR13J1Q8NGT2 312 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 NECAB3Q96P71 396 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 PITHD1Q9GZP4 211 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF350Q9GZX5 532 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 SH3BGRL2Q9UJC5 107 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 AP1M2Q9Y6Q5 423 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 TNFRSF10AO00220 468 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 F3P13726 295 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 AMY2BP19961 511 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 APOFQ13790 326 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 RSU1Q15404 277 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 RGNQ15493 299 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 ACBD7Q8N6N7 88 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 MAFIPQ8WZ33 124 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 MACROD1Q9BQ69 325 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 CCDC88AQ3V6T2 1871 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 EFCAB7A8K855 629 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF850A8MQ14 1090 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 M0R036 132 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 LDB3O75112 727 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 PVRP15151 417 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 GGT1P19440 569 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 DNASE1P24855 282 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 HTR2AP28223 471 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 UQCRC1P31930 480 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 UGT2B10P36537 528 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 EEF1A2Q05639 463 aaKnown RBP12.41□□□□□ -0.42
PTPRF-215ENST00000496447 NPRL3Q12980 569 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 RAB41Q5JT25 222 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 ARSKQ6UWY0 536 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 OR4K5Q8NGD3 323 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 SLC6A7Q99884 636 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 BEX2Q9BXY8 128 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 RBBP9O75884 186 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 PNMTP11086 282 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 CD79AP11912 226 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 BMXP51813 675 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 PSMA6P60900 246 aaKnown RBP12.41□□□□□ -0.42
PTPRF-215ENST00000496447 MELKQ14680 651 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 COQ5Q5HYK3 327 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 FAM205BPQ63HN1 556 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 ANKRD54Q6NXT1 300 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 VTCN1Q7Z7D3 282 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 PIANPQ8IYJ0 282 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF784Q8NCA9 323 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-215ENST00000496447 FAM174AQ8TBP5 190 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 SLC25A44Q96H78 314 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-215ENST00000496447 DPCDQ9BVM2 203 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-215ENST00000496447 RDH14Q9HBH5 336 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 C14orf119Q9NWQ9 140 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 USP3Q9Y6I4 520 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 NSG1A0A0A6YYJ2 146 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 ANTXRLA6NF34 631 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 POU3F2P20265 443 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-215ENST00000496447 APLNRP35414 380 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 MAP2K4P45985 399 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 PLBD1Q6P4A8 553 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 Q6ZNX1 250 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 METTL25Q8N6Q8 603 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 PNPLA1Q8N8W4 532 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 MFSD8Q8NHS3 518 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 SPTSSAQ969W0 71 aa12.41□□□□□ -0.42
PTPRF-215ENST00000496447 AQP9O43315 295 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SIX1Q15475 284 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SORBS1Q9BX66 1292 aaKnown RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SLC7A7Q9UM01 511 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 TRBV11-1A0A0K0K1C0 115 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SULT2B1O00204 365 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 UBL4AP11441 157 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 GCH1P30793 250 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 PRPS1P60891 318 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 GALNT1Q10472 559 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 MLF2Q15773 248 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 STK11Q15831 433 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 TMEM184AQ6ZMB5 413 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms