RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PROS1P07225 676 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 CSTF2P33240 577 aaKnown RBP eCLIP19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 IDUAP35475 653 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 MLLT1Q03111 559 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 NCF4Q15080 339 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 SYT14P1Q58G82 188 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 RRM2BQ7LG56 351 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 MRGPREQ86SM8 312 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 MGLLQ99685 303 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 RBCK1Q9BYM8 510 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 PCDHGA3Q9Y5H0 932 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 TRIOO75962 3097 aa19.64■□□□□ 0.73
CCDC88B-208ENST00000492980 LIMK1P53667 647 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 C16orf87Q6PH81 154 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 FOXQ1Q9C009 403 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 OR51E2Q9H255 320 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 DOLKQ9UPQ8 538 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 LSM2Q9Y333 95 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 NPIPA5A0A0B4J1W7 369 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 GXYLT2A0PJZ3 443 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 LILRA5A6NI73 299 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 CLDN25C9JDP6 229 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 NPIPA7E9PJI5 369 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 PEX12O00623 359 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 SRPX2O60687 465 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 AK1P00568 194 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 NPIPA8P0DM63 369 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 NID1P14543 1247 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 FPR3P25089 353 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 RHAGQ02094 409 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 MAP4K2Q12851 820 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 ZNF846Q147U1 533 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 SNAPC1Q16533 368 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 SLC27A4Q6P1M0 643 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 FIGNL1Q6PIW4 674 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 MBOAT2Q6ZWT7 520 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 VWA5B2Q8N398 1253 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 OR52R1Q8NGF1 315 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 TMEM255BQ8WV15 326 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 HOXB13Q92826 284 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 TCTN2Q96GX1 697 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 LRR1Q96L50 414 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 ZNF582Q96NG8 517 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 HCN3Q9P1Z3 774 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 CLEC2DQ9UHP7 191 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 SLC7A7Q9UM01 511 aa19.63■□□□□ 0.73
CCDC88B-208ENST00000492980 KLF4O43474 513 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 FOXS1O43638 330 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 PIP5K1CO60331 668 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 OR10H2O60403 315 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 GABRA3P34903 492 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 RACK1P63244 317 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 POU6F2P78424 691 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 ZNF155Q12901 538 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 TSTQ16762 297 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 MRPL2Q5T653 305 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 C19orf48Q6RUI8 117 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 RANBP3LQ86VV4 465 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 NRMQ8IXM6 262 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 TOR1AIP2Q8NFQ8 470 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 OR6Q1Q8NGQ2 317 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 SLC38A3Q99624 504 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 FBXO8Q9NRD0 319 aa19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 MRPS17Q9Y2R5 130 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-208ENST00000492980 GON4LQ3T8J9 2241 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 hCG_2014768A0A024R1R8 64 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 NKX2-2O95096 273 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 PRG2P13727 222 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 STAT5AP42229 794 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 TUBA1BP68363 451 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 SRSF5Q13243 272 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 NR1D2Q14995 579 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 RNLSQ5VYX0 342 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 USP43Q70EL4 1123 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 TUBA1AQ71U36 451 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 IGFN1Q86VF2 1251 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 SLC34A3Q8N130 599 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 POGLUT1Q8NBL1 392 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 CADM4Q8NFZ8 388 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 TMEM163Q8TC26 289 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 HMG20AQ9NP66 347 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 TGFBR3LH3BV60 316 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 BRINP1O60477 761 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 RNH1P13489 461 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 S1PR1P21453 382 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 HTR2AP28223 471 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 GPR4P46093 362 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 SOWAHCQ53LP3 525 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 ATCAYQ86WG3 371 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 C17orf82Q86X59 251 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 GALNT12Q8IXK2 581 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 TMCO5AQ8N6Q1 288 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 OPALINQ96PE5 141 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 TAPBPLQ9BX59 468 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 PCED1AQ9H1Q7 454 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 ERGIC3Q9Y282 383 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 THADAQ6YHU6 1953 aa19.61■□□□□ 0.73
CCDC88B-208ENST00000492980 LOC100506127A0A0U1RQW1 187 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 CDHR4A6H8M9 788 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms