RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 ZNF844Q08AG5 666 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 IFT88Q13099 833 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.33□□□□□ -1.24
USP39-216ENST00000490193 EXOC3L2Q2M3D2 409 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 ERCC6LQ2NKX8 1250 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 LINC01559Q495D7 138 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.33□□□□□ -1.24
USP39-216ENST00000490193 CREG2Q8IUH2 290 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 CTAGE4Q8IX94 777 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 CTAGE3PQ8IX95 158 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 SAMD14Q8IZD0 417 aaPredicted RBP7.33□□□□□ -1.24
USP39-216ENST00000490193 FBXW5Q969U6 566 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 EFHD2Q96C19 240 aaPredicted RBP7.33□□□□□ -1.24
USP39-216ENST00000490193 C1GALT1C1Q96EU7 318 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 ZBED6CLQ96FA7 236 aaPredicted RBP7.33□□□□□ -1.24
USP39-216ENST00000490193 GPR78Q96P69 363 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 FAIM2Q9BWQ8 316 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 PTGES2Q9H7Z7 377 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 ANKRA2Q9H9E1 313 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 BRF2Q9HAW0 419 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 FOLH1BQ9HBA9 442 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 YAE1D1Q9NRH1 226 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 SDHAF3Q9NRP4 125 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 GLRX2Q9NS18 164 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 TMEM160Q9NX00 188 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 PAQR5Q9NXK6 330 aaPredicted RBP7.33□□□□□ -1.24
USP39-216ENST00000490193 CDC42EP3Q9UKI2 254 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 PCTPQ9UKL6 214 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 SNX24Q9Y343 169 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 RNF115Q9Y4L5 304 aa7.33□□□□□ -1.24
USP39-216ENST00000490193 A0A096LNT2 108 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 HMX2A2RU54 273 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 STX16-NPEPL1H3BU86 382 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 STX16O14662 325 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 SCO2O43819 266 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 KLHL2O95198 593 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 IGHV4-39P01824 125 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 ZNF17P17021 662 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 SLC6A8P48029 635 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 CCNG1P51959 295 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 CTBP2P56545 445 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 PSG6Q00889 435 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 ZNF672Q499Z4 452 aaPredicted RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 CYP27C1Q4G0S4 372 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 TECRLQ5HYJ1 363 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 NCMAPQ5T1S8 102 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 C6orf52Q5T4I8 152 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 TTC19Q6DKK2 380 aaPredicted RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 FAM180BQ6P0A1 224 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 KLC3Q6P597 504 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 EXOC3L1Q86VI1 746 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 WFDC8Q8IUA0 241 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 CCDC116Q8IYX3 515 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 PPM1NQ8N819 430 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 STEAP2Q8NFT2 490 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 OR4N2Q8NGD1 307 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 UHMK1Q8TAS1 419 aaKnown RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 RAB3IL1Q8TBN0 382 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 SMAP2Q8WU79 429 aaPredicted RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 GTPBP3Q969Y2 492 aaKnown RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 ATP6V1E2Q96A05 226 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 ITPKCQ96DU7 683 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 C11orf24Q96F05 449 aaPredicted RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 ADGRG7Q96K78 797 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 SHCBP1LQ9BZQ2 653 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 RTN4RQ9BZR6 473 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 ELOVL6Q9H5J4 265 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 BARX1Q9HBU1 254 aaPredicted RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 FAM120CQ9NX05 1096 aaKnown RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 TAS2R9Q9NYW1 312 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 MED11Q9P086 117 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 STOML1Q9UBI4 398 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 UTS2RQ9UKP6 389 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 TMCO1Q9UM00 188 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 SLC12A4Q9UP95 1085 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 LIPT1Q9Y234 373 aa7.32□□□□□ -1.24
USP39-216ENST00000490193 MAGED1Q9Y5V3 778 aaPredicted RBP7.32□□□□□ -1.24
USP39-216ENST00000490193 A0A087WV62 115 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 C7orf72A4D263 438 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 ADAMDEC1O15204 470 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 ADAM11O75078 769 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 COQ9O75208 318 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 NME6O75414 186 aaPredicted RBP7.31□□□□□ -1.24
USP39-216ENST00000490193 GCM2O75603 506 aaPredicted RBP7.31□□□□□ -1.24
USP39-216ENST00000490193 SLITRK5O94991 958 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 PSMG1O95456 288 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 PLGP00747 810 aaPredicted RBP7.31□□□□□ -1.24
USP39-216ENST00000490193 PDYNP01213 254 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 BMP2P12643 396 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 HSD3B1P14060 373 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 HSD3B2P26439 372 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 AGTR1P30556 359 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 STX2P32856 288 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 CDKN1AP38936 164 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 ARL1P40616 181 aaPredicted RBP7.31□□□□□ -1.24
USP39-216ENST00000490193 ALDH9A1P49189 494 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 CALCOCO2Q13137 446 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 SGCBQ16585 318 aa7.31□□□□□ -1.24
USP39-216ENST00000490193 CTU2Q2VPK5 515 aaKnown RBP7.31□□□□□ -1.24
USP39-216ENST00000490193 PGGHGQ32M88 737 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms