RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PEPDP12955 493 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 KRT4P19013 534 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 GABRA3P34903 492 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 GPC1P35052 558 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 PCLAFQ15004 111 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 ZNF385BQ569K4 471 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 VWA1Q6PCB0 445 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 SZRD1Q7Z422 152 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 GALNT10Q86SR1 603 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 TDRPQ86YL5 185 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 TGIF2LYQ8IUE0 185 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 CNPY4Q8N129 248 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 CNEP1R1Q8N9A8 125 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 FBXO30Q8TB52 745 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 DUSP19Q8WTR2 217 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 SMPDL3BQ92485 455 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 FIG4Q92562 907 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 PIK3R3Q92569 461 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 TSSK3Q96PN8 268 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 LMF2Q9BU23 707 aaKnown RBP19.47■□□□□ 0.71
USP40-215ENST00000484528 PIGMQ9H3S5 423 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 SDHAF3Q9NRP4 125 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 C1orf109Q9NX04 203 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 FAM120CQ9NX05 1096 aaKnown RBP19.47■□□□□ 0.71
USP40-215ENST00000484528 WBP11Q9Y2W2 641 aaKnown RBP19.47■□□□□ 0.71
USP40-215ENST00000484528 ZNF337Q9Y3M9 751 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 NAV3Q8IVL0 2385 aa19.47■□□□□ 0.71
USP40-215ENST00000484528 OR2M5A3KFT3 312 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 SH3D21A4FU49 640 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 SHISA8B8ZZ34 492 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 SLC28A1O00337 649 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 AZIN1O14977 448 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 IGKV1D-16P01601 117 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 KLK2P20151 261 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 SUCLG1P53597 346 aaKnown RBP19.46■□□□□ 0.71
USP40-215ENST00000484528 DIO3P55073 304 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 CLDN15P56746 228 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 PPP2R2AP63151 447 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 RPL38P63173 70 aaKnown RBP19.46■□□□□ 0.71
USP40-215ENST00000484528 SIRPAP78324 504 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 BCL2A1Q16548 175 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 EXOC3L1Q86VI1 746 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 MEIOBQ8N635 442 aa19.46■□□□□ 0.71
USP40-215ENST00000484528 GATA5Q9BWX5 397 aaPredicted RBP19.46■□□□□ 0.71
USP40-215ENST00000484528 NUP214P35658 2090 aaPredicted RBP19.46■□□□□ 0.71
USP40-215ENST00000484528 A8MXE2 369 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 RGS14O43566 566 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 UTS2O95399 124 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 RAF1P04049 648 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 SDC1P18827 310 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 EFNA1P20827 205 aaPredicted RBP19.45■□□□□ 0.7
USP40-215ENST00000484528 PRPH2P23942 346 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 PRKAG1P54619 331 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 CLDN20P56880 219 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 GRAMD1BQ3KR37 738 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 APOOLQ6UXV4 268 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 Q6ZSR9 355 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 GPR151Q8TDV0 419 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 PPCDCQ96CD2 204 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 C1GALT1C1Q96EU7 318 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 CCT7Q99832 543 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 PINK1Q9BXM7 581 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 TBL1XR1Q9BZK7 514 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 TUBB1Q9H4B7 451 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 PTGES2Q9H7Z7 377 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 PLEKHF2Q9H8W4 249 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 BAIAP2L1Q9UHR4 511 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 MRTO4Q9UKD2 239 aaKnown RBP19.45■□□□□ 0.7
USP40-215ENST00000484528 EDARQ9UNE0 448 aa19.45■□□□□ 0.7
USP40-215ENST00000484528 ZNF469Q96JG9 3925 aaPredicted RBP19.45■□□□□ 0.7
USP40-215ENST00000484528 A0A1W2PPR1 153 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 TMEM233B4DJY2 109 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 ATE1O95260 518 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 ANGPTL1O95841 491 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 HRGP04196 525 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 LINC00032P0C843 101 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 PRPS2P11908 318 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 CLK3P49761 638 aaKnown RBP19.44■□□□□ 0.7
USP40-215ENST00000484528 PSMD4P55036 377 aaKnown RBP19.44■□□□□ 0.7
USP40-215ENST00000484528 FOXD4Q12950 439 aaPredicted RBP19.44■□□□□ 0.7
USP40-215ENST00000484528 KEAP1Q14145 624 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 GANABQ14697 944 aaKnown RBP19.44■□□□□ 0.7
USP40-215ENST00000484528 GALNTL6Q49A17 601 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 OR2W6PQ8NHA6 318 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 STARD4Q96DR4 205 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 OTUB1Q96FW1 271 aaPredicted RBP19.44■□□□□ 0.7
USP40-215ENST00000484528 ZNF845Q96IR2 970 aaPredicted RBP19.44■□□□□ 0.7
USP40-215ENST00000484528 METTL2AQ96IZ6 378 aaKnown RBP19.44■□□□□ 0.7
USP40-215ENST00000484528 DACH2Q96NX9 599 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 ALPK1Q96QP1 1244 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 OPN3Q9H1Y3 402 aaPredicted RBP19.44■□□□□ 0.7
USP40-215ENST00000484528 REEP4Q9H6H4 257 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 C3orf14Q9HBI5 128 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 SH3BP4Q9P0V3 963 aa19.44■□□□□ 0.7
USP40-215ENST00000484528 TLDC2A0PJX2 215 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 KCNH1O95259 989 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 CHRNGP07510 517 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 SLC18A2Q05940 514 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 FAM27E3Q08E93 113 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 RFTN2Q52LD8 501 aaPredicted RBP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms