RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SHCBP1LQ9BZQ2 653 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 TRIM8Q9BZR9 551 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ACBD3Q9H3P7 528 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 GSTO2Q9H4Y5 243 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 L2HGDHQ9H9P8 463 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 PROK2Q9HC23 129 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 MID1IP1Q9NPA3 183 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ACKR4Q9NPB9 350 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 GIMAP4Q9NUV9 329 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 MAT2BQ9NZL9 334 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 PRODH2Q9UF12 536 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF639Q9UID6 485 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 EMCNQ9ULC0 261 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 GRID1Q9ULK0 1009 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 RNF6Q9Y252 685 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 DTX4Q9Y2E6 619 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 DLGAP4Q9Y2H0 992 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 PLLPQ9Y342 182 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 TIMM22Q9Y584 194 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 APCP25054 2843 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 LRBAP50851 2863 aa6.21□□□□□ -1.41
CCDC88A-213ENST00000476903 C15orf38-AP3S2A0A0A6YYH1 394 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 FRG2CA6NGY1 282 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SMIM23A6NLE4 172 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM90A27PA6NNH2 459 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM47E-STBD1D6RA91 191 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 UBFD1O14562 309 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 COPEO14579 308 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 PLIN3O60664 434 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 TRIM3O75382 744 aaPredicted RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 PPM1BO75688 479 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 TP53P04637 393 aaPredicted RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ABCB1P08183 1280 aaPredicted RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 HOXD4P09016 255 aaPredicted RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 CPA3P15088 417 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 KRT4P19013 534 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 DRD5P21918 477 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ELAVL4P26378 380 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SSTR2P30874 369 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 CRHR1P34998 444 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 CASP3P42574 277 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 MASP1P48740 699 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 NAGLUP54802 743 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 FOXA1P55317 472 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 DNAJB13P59910 316 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 PSPHP78330 225 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 RAE1P78406 368 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 DUSP2Q05923 314 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 BTKQ06187 659 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF763Q0D2J5 394 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 PLCXD2Q0VAA5 305 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 MGAT2Q10469 447 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 DUSP8Q13202 625 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SNTA1Q13424 505 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 EXOSC7Q15024 291 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 LTB4RQ15722 352 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 NNATQ16517 81 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 IMPG1Q17R60 797 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ERCC6LQ2NKX8 1250 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 TRMT12Q53H54 448 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF628Q5EBL2 1059 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SPDYAQ5MJ70 313 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 C1orf185Q5T7R7 199 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM180BQ6P0A1 224 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ETV3LQ6ZN32 361 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SH2D5Q6ZV89 423 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 CCDC71Q8IV32 467 aaPredicted RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 PRR22Q8IZ63 422 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM9CQ8IZT9 166 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 RPRMLQ8N4K4 120 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 OR10Q1Q8NGQ4 319 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 NEIL3Q8TAT5 605 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF675Q8TD23 568 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 C16orf78Q8WTQ4 265 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 EXOSC8Q96B26 276 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 OMA1Q96E52 524 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 APIPQ96GX9 242 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 TMEM41AQ96HV5 264 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 DOCK7Q96N67 2140 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 KCNA7Q96RP8 456 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 TTYH2Q9BSA4 534 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 EBPLQ9BY08 206 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ITPAQ9BY32 194 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ANGPTL4Q9BY76 406 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 NXF5Q9H1B4 397 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC6A15Q9H2J7 730 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 METTL7AQ9H8H3 244 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC35C2Q9NQQ7 365 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ALKBH4Q9NXW9 302 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 EHD3Q9NZN3 535 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SENP1Q9P0U3 644 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 SPRR3Q9UBC9 169 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 HEY2Q9UBP5 337 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 MID2Q9UJV3 735 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 PCDHGB3Q9Y5G1 929 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM215AQ9Y5M1 114 aa6.21□□□□□ -1.42
CCDC88A-213ENST00000476903 ABCA12Q86UK0 2595 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 FBN2P35556 2912 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 MYO9AB2RTY4 2548 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms