RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 FAM120CQ9NX05 1096 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MED11Q9P086 117 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PSMC3IPQ9P2W1 217 aaPredicted RBP11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TLN2Q9Y4G6 2542 aa11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FN1P02751 2386 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OR2M5A3KFT3 312 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DEFB108AA8MXU0 73 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 H0YC42 278 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CTIFO43310 598 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PLIN3O60664 434 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TBX19O60806 448 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 RSL1D1O76021 490 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 IGKV1D-16P01601 117 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 LOXP28300 417 aaPredicted RBP11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FRKP42685 505 aaPredicted RBP11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DIO3P55073 304 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TPD52P55327 224 aaPredicted RBP11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PPP2R2AP63151 447 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PRR5P85299 388 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 KEAP1Q14145 624 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DECR1Q16698 335 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SPDYAQ5MJ70 313 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EXOSC6Q5RKV6 272 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OR2A2Q6IF42 318 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 NOXRED1Q6NXP6 359 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TMEM107Q6UX40 140 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 RNF165Q6ZSG1 346 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 Q6ZSR9 355 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 IKBIPQ70UQ0 350 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 IFT20Q8IY31 132 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 METTL25Q8N6Q8 603 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OR4K17Q8NGC6 315 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DUSP19Q8WTR2 217 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FIG4Q92562 907 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 C1GALT1C1Q96EU7 318 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 YIPF4Q9BSR8 244 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 RNF122Q9H9V4 155 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SDHAF3Q9NRP4 125 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 BEX4Q9NWD9 120 aaPredicted RBP11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OXSMQ9NWU1 459 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 PPP4R1LQ9P1A2 415 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 DKKL1Q9UK85 242 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 OR10H1Q9Y4A9 318 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CSPG4Q6UVK1 2322 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FREM1Q5H8C1 2179 aa11.04□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SLC22A20A6NK97 555 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TTC36A6NLP5 189 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 EMC8O43402 210 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 SCO2O43819 266 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 NKX2-2O95096 273 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 UROSP10746 265 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MYL2P10916 166 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CD8BP10966 210 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 HK1P19367 917 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CCKARP32238 428 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CRHR1P34998 444 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CD79BP40259 229 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CLDN20P56880 219 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 C22orf34Q6ZV56 151 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 MARCH3Q86UD3 253 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TDRPQ86YL5 185 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 CCNYL1Q8N7R7 359 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 FAM110BQ8TC76 370 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GIMAP5Q96F15 307 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 Q9N2J8 555 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ELOVL5Q9NYP7 299 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 NDRG3Q9UGV2 375 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 TBK1Q9UHD2 729 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 ZNF175Q9Y473 711 aa11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 POLR3HQ9Y535 204 aaPredicted RBP11.03□□□□□ -0.64
MSH5-SAPCD1-205ENST00000476085 GXYLT2A0PJZ3 443 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ALG1L2C9J202 215 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 GLRA3O75311 464 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 NGFRP08138 427 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CRYGSP22914 178 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PSMA4P25789 261 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 UGT2B10P36537 528 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CPA2P48052 419 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 EEFSECP57772 596 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C17orf67Q0P5P2 114 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZNF155Q12901 538 aaPredicted RBP11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 POU4F3Q15319 338 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CCDC153Q494R4 210 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZNF385BQ569K4 471 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZNF551Q7Z340 670 aaPredicted RBP11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 GGNQ86UU5 652 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 MEIOBQ8N635 442 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 EIF1ADQ8N9N8 165 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PGM2Q96G03 612 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZNF845Q96IR2 970 aaPredicted RBP11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PIP5K1AQ99755 562 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 TUBB1Q9H4B7 451 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PTGES2Q9H7Z7 377 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 NEUROD4Q9HD90 331 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 MIEF1Q9NQG6 463 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 RRAGDQ9NQL2 400 aaPredicted RBP11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SENP1Q9P0U3 644 aa11.02□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 AP4B1Q9Y6B7 739 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms