RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	PDE7A	Q13946	482 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	ZNHIT3	Q15649	155 aa	Predicted RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	PGS1	Q32NB8	556 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	LIX1L	Q8IVB5	337 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	WDR75	Q8IWA0	830 aa	Known RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	KRTCAP2	Q8N6L1	136 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	FAM83F	Q8NEG4	500 aa	Predicted RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	TNIP2	Q8NFZ5	429 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	GOT1L1	Q8NHS2	421 aa	Predicted RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	TMBIM1	Q969X1	311 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF764	Q96H86	408 aa	Predicted RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	DPY30	Q9C005	99 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	FOLH1B	Q9HBA9	442 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	C3orf14	Q9HBI5	128 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	GALNT9	Q9HCQ5	603 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	SERHL	Q9NQF3	203 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	DNAJB12	Q9NXW2	375 aa	Known RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	DKKL1	Q9UK85	242 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	EXPH5	Q8NEV8	1989 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643		A0A087WV62	115 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643		A0A1W2PRB8	838 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	C2orf72	A6NCS6	295 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	SNPH	O15079	494 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	CFLAR	O15519	480 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	EDF1	O60869	148 aa	Known RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	ICOSLG	O75144	302 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	UGT2B11	O75310	529 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	EPPIN	O95925	133 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	ACTL6A	O96019	429 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	CD1E	P15812	388 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	DRD5	P21918	477 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	EPHA3	P29320	983 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	DIO3	P55073	304 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	WNT3	P56703	355 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	PSPH	P78330	225 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	GUCY1A3	Q02108	690 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	SRY	Q05066	204 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	EFR3A	Q14156	821 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	AAGAB	Q6PD74	315 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	IFNE	Q86WN2	208 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	KIF18B	Q86Y91	864 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	SLC44A2	Q8IWA5	706 aa	Predicted RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	NATD1	Q8N6N6	113 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	RNASE6	Q93091	150 aa	Known RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	ELP4	Q96EB1	424 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	RMND5B	Q96G75	393 aa	Predicted RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	ADO	Q96SZ5	270 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	UGT2B28	Q9BY64	529 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	POLDIP3	Q9BY77	421 aa	Known RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	PRDM14	Q9GZV8	571 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	WDR55	Q9H6Y2	383 aa	Predicted RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	EQTN	Q9NQ60	294 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	ACSS1	Q9NUB1	689 aa	Predicted RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	ASIC5	Q9NY37	505 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF629	Q9UEG4	869 aa	Predicted RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	FOXD3	Q9UJU5	478 aa	Predicted RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	C19orf53	Q9UNZ5	99 aa	Predicted RBP	13.78	□□□□□ -0.2
VARS-223	ENST00000474643	L3MBTL1	Q9Y468	752 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	SNX8	Q9Y5X2	465 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	AKAP9	Q99996	3911 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	HCFC1	P51610	2035 aa		13.78	□□□□□ -0.2
VARS-223	ENST00000474643	OR6C70	A6NIJ9	312 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	UPK1A	O00322	258 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	PLOD2	O00469	737 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	SDHD	O14521	159 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	DIAPH2	O60879	1101 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	NME6	O75414	186 aa	Predicted RBP	13.77	□□□□□ -0.21
VARS-223	ENST00000474643	CBR3	O75828	277 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	LAMP1	P11279	417 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	BMP7	P18075	431 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	POU3F2	P20265	443 aa	Predicted RBP	13.77	□□□□□ -0.21
VARS-223	ENST00000474643	TCEA1	P23193	301 aa	Known RBP	13.77	□□□□□ -0.21
VARS-223	ENST00000474643	PTPN6	P29350	595 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	TIMP3	P35625	211 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	SOX18	P35713	384 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	CPA2	P48052	419 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	ART1	P52961	327 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	NME5	P56597	212 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	CLDN8	P56748	225 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	SNTB1	Q13884	538 aa	Known RBP	13.77	□□□□□ -0.21
VARS-223	ENST00000474643	LSM12	Q3MHD2	195 aa	Known RBP	13.77	□□□□□ -0.21
VARS-223	ENST00000474643	SPDYE7P	Q495Y7	208 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	VASN	Q6EMK4	673 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
VARS-223	ENST00000474643	CHMP1B	Q7LBR1	199 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	SPATA19	Q7Z5L4	167 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	NUP43	Q8NFH3	380 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	OR4K17	Q8NGC6	315 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	CEP70	Q8NHQ1	597 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	ZNF317	Q96PQ6	595 aa	Predicted RBP	13.77	□□□□□ -0.21
VARS-223	ENST00000474643	NODAL	Q96S42	347 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	DUSP26	Q9BV47	211 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	CLEC4M	Q9H2X3	399 aa	Predicted RBP	13.77	□□□□□ -0.21
VARS-223	ENST00000474643	UBQLN3	Q9H347	655 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	TAS2R10	Q9NYW0	307 aa		13.77	□□□□□ -0.21
VARS-223	ENST00000474643	TEP1	Q99973	2627 aa	Known RBP	13.76	□□□□□ -0.21
VARS-223	ENST00000474643	CD8B2	A6NJW9	211 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	OPRM1	P35372	400 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	SOAT1	P35610	550 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	CORO7	P57737	925 aa		13.76	□□□□□ -0.21

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