RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 ELP4Q96EB1 424 aa17.84■□□□□ 0.45
COL9A3-210ENST00000472880 C3orf14Q9HBI5 128 aa17.84■□□□□ 0.45
COL9A3-210ENST00000472880 ABCA4P78363 2273 aa17.84■□□□□ 0.45
COL9A3-210ENST00000472880 LINC01387J3KSC0 135 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 FOSL1P15407 271 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 DNAJB13P59910 316 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 C1GALT1C1Q96EU7 318 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 FAM111AQ96PZ2 611 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 PIGQQ9BRB3 760 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 LMF2Q9BU23 707 aaKnown RBP17.83■□□□□ 0.44
COL9A3-210ENST00000472880 PINK1Q9BXM7 581 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 TBL1XR1Q9BZK7 514 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 NEUROD4Q9HD90 331 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 DLL4Q9NR61 685 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 ZFHX3Q15911 3703 aa17.83■□□□□ 0.44
COL9A3-210ENST00000472880 OR2M5A3KFT3 312 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 TTC36A6NLP5 189 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 PDPK1O15530 556 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 PLIN3O60664 434 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 SEC22BO75396 215 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 KCNH1O95259 989 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 IFI6P09912 130 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 UROSP10746 265 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 GPC1P35052 558 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 CD79BP40259 229 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 CCT5P48643 541 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 SIRPAP78324 504 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 HSPB3Q12988 150 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 MARCH3Q86UD3 253 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 OR5M1Q8NGP8 315 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 DUSP19Q8WTR2 217 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 FIG4Q92562 907 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 STARD4Q96DR4 205 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 PGM2Q96G03 612 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 METTL2AQ96IZ6 378 aaKnown RBP17.82■□□□□ 0.44
COL9A3-210ENST00000472880 RTN4RQ9BZR6 473 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 TNFRSF12AQ9NP84 129 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 EQTNQ9NQ60 294 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 BEX4Q9NWD9 120 aaPredicted RBP17.82■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF337Q9Y3M9 751 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF175Q9Y473 711 aa17.82■□□□□ 0.44
COL9A3-210ENST00000472880 A0A1W2PPR1 153 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 H0YC42 278 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF500O60304 480 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 TNFRSF21O75509 655 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 UTS2O95399 124 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 CD53P19397 219 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 GABRA3P34903 492 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 PCYT1AP49585 367 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 SUCLG1P53597 346 aaKnown RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 TPD52P55327 224 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 RPS3AP61247 264 aaKnown RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 FAM27E3Q08E93 113 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 FGFBP1Q14512 234 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 CLEC6AQ6EIG7 209 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF551Q7Z340 670 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 BTLAQ7Z6A9 289 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 WFDC11Q8NEX6 87 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 GFM2Q969S9 779 aaKnown RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF845Q96IR2 970 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 EGLN2Q96KS0 407 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 MED18Q9BUE0 208 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 IQCGQ9H095 443 aaKnown RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 OPN3Q9H1Y3 402 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF226Q9NYT6 803 aa17.81■□□□□ 0.44
COL9A3-210ENST00000472880 GXYLT2A0PJZ3 443 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 SMIM23A6NLE4 172 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 SLC28A1O00337 649 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 RGS14O43566 566 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 GMFGO60234 142 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 ANGPTL1O95841 491 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 POU2F1P14859 743 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 CPA3P15088 417 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 PRPH2P23942 346 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 CRHR1P34998 444 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 KIR2DL2P43627 348 aaPredicted RBP17.8■□□□□ 0.44
COL9A3-210ENST00000472880 KCNJ5P48544 419 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 CLDN15P56746 228 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 CLDN20P56880 219 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 C17orf67Q0P5P2 114 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 PON3Q15166 354 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 GRAMD1BQ3KR37 738 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 GLYR1Q49A26 553 aaPredicted RBP17.8■□□□□ 0.44
COL9A3-210ENST00000472880 VPS26BQ4G0F5 336 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 LIPMQ5VYY2 423 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 SZRD1Q7Z422 152 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 ZFP28Q8NHY6 868 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 FNDC9Q8TBE3 224 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 GPR151Q8TDV0 419 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 UBLCP1Q8WVY7 318 aaPredicted RBP17.8■□□□□ 0.44
COL9A3-210ENST00000472880 PIK3R3Q92569 461 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 SLC39A3Q9BRY0 314 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 GSX1Q9H4S2 264 aaPredicted RBP17.8■□□□□ 0.44
COL9A3-210ENST00000472880 RNF122Q9H9V4 155 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 LRTM1Q9HBL6 345 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 OXSMQ9NWU1 459 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 C1orf109Q9NX04 203 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 KLHL28Q9NXS3 571 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 C6orf203Q9P0P8 240 aaPredicted RBP17.8■□□□□ 0.44
COL9A3-210ENST00000472880 MID2Q9UJV3 735 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms