RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 DPEP3Q9H4B8 488 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 MCM3APO60318 1980 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 GSRP00390 522 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 BRCC3P46736 316 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 CX3CR1P49238 355 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 MFGE8Q08431 387 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-209ENST00000472056 PRAMEF18Q5VWM3 479 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 TIGD3Q6B0B8 471 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 TMPPEQ6ZT21 453 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 FAM122BQ7Z309 247 aa12.65□□□□□ -0.38
COL6A3-209ENST00000472056 WDR6Q9NNW5 1121 aaKnown RBP12.65□□□□□ -0.38
COL6A3-209ENST00000472056 SLC22A23A1A5C7 686 aa12.65□□□□□ -0.39
COL6A3-209ENST00000472056 SLC35F4A4IF30 521 aa12.65□□□□□ -0.39
COL6A3-209ENST00000472056 ZBTB48P10074 688 aaPredicted RBP12.65□□□□□ -0.39
COL6A3-209ENST00000472056 CD1DP15813 335 aa12.65□□□□□ -0.39
COL6A3-209ENST00000472056 ELK1P19419 428 aa12.65□□□□□ -0.39
COL6A3-209ENST00000472056 PCBP2Q15366 365 aaKnown RBP eCLIP12.65□□□□□ -0.39
COL6A3-209ENST00000472056 MPEG1Q2M385 716 aa12.65□□□□□ -0.39
COL6A3-209ENST00000472056 DBF4BQ8NFT6 615 aa12.65□□□□□ -0.39
COL6A3-209ENST00000472056 PPP1R35Q8TAP8 253 aa12.65□□□□□ -0.39
COL6A3-209ENST00000472056 SORCS2Q96PQ0 1159 aa12.65□□□□□ -0.39
COL6A3-209ENST00000472056 TNFRSF10AO00220 468 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 SOX1O00570 391 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-209ENST00000472056 DPM1O60762 260 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 SELENOWP63302 87 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 VITQ6UXI7 678 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 C19orf35Q6ZS72 473 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 IQCF1Q8N6M8 205 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 NICN1Q9BSH3 213 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 CWH43Q9H720 699 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 DKKL1Q9UK85 242 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 PPP1R2P9O14990 202 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 MED6O75586 246 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 DFFBO76075 338 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 SYNGR4O95473 234 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 TMEM225Q6GV28 225 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 LPPQ93052 612 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 OR6C65A6NJZ3 312 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 WASH4PA8MWX3 477 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 FANCGO15287 622 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 OLFM2O95897 454 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 PDGFRLQ15198 375 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 WDR88Q6ZMY6 472 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 NUP43Q8NFH3 380 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 TEPSINQ96N21 525 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 RDH14Q9HBH5 336 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 BTNL2Q9UIR0 455 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 RNF11Q9Y3C5 154 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 A0A1B0GVT2 93 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 ARVCFO00192 962 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 KHNYNO15037 678 aaKnown RBP12.64□□□□□ -0.39
COL6A3-209ENST00000472056 RHOP08100 348 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 PPT1P50897 306 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 GALK2Q01415 458 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 LNX2Q8N448 690 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 DDIT4LQ96D03 193 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 CTPS2Q9NRF8 586 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 TMEM200CA6NKL6 621 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 PPA1Q15181 289 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 MTMR14Q8NCE2 650 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 TCRBV3S1A0A5B6 114 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 SEC14L5O43304 696 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 HLA-AP01891 365 aaKnown RBP12.64□□□□□ -0.39
COL6A3-209ENST00000472056 MAGEB1P43366 347 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 CHRNA6Q15825 494 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 SLC51BQ86UW2 128 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 MS4A4EQ96PG1 132 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 TMEM175Q9BSA9 504 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 GPR83Q9NYM4 423 aa12.64□□□□□ -0.39
COL6A3-209ENST00000472056 FOXO6A8MYZ6 492 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 PRSS44E7EML9 344 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ADAM23O75077 832 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ARSBP15848 533 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-209ENST00000472056 GTF2H5Q6ZYL4 71 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ZFP82Q8N141 532 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 TMEM151AQ8N4L1 468 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ANKK1Q8NFD2 765 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 OR6Q1Q8NGQ2 317 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 PGAM5Q96HS1 289 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 BEX2Q9BXY8 128 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 FAM198AQ9UFP1 575 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 RNF150Q9ULK6 438 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 C17orf112F2Z3M2 114 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 PEX12O00623 359 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF623O75123 536 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ACTL6BO94805 426 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 SCGB1D1O95968 90 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 SERPINE2P07093 398 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 M6PRP20645 277 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 TAGLN2P37802 199 aaKnown RBP12.63□□□□□ -0.39
COL6A3-209ENST00000472056 PLA2G7Q13093 441 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF425Q6IV72 752 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 PTPN18Q99952 460 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 FBRSQ9HAH7 460 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 A0A0G2JN53 185 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 CLEC3AO75596 197 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 BEX3Q00994 111 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 MS4A13Q5J8X5 152 aa12.63□□□□□ -0.39
COL6A3-209ENST00000472056 KCNRGQ8N5I3 272 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms