RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PLAC1Q9HBJ0 212 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 RAVER2Q9HCJ3 691 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 CD209Q9NNX6 404 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 OR2S2Q9NQN1 319 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 NLGN3Q9NZ94 848 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 PIPOXQ9P0Z9 390 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ENOPH1Q9UHY7 261 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 PHF11Q9UIL8 331 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 C3orf18Q9UK00 162 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 NOCTQ9UK39 431 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 PITPNC1Q9UKF7 332 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 RNF150Q9ULK6 438 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ABCG2Q9UNQ0 655 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 FLVCR2Q9UPI3 526 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ATG4BQ9Y4P1 393 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 CSDC2Q9Y534 153 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 CUX2O14529 1486 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TRBV11-1A0A0K0K1C0 115 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 A0A1W2PQ67 120 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TMEM238C9JI98 176 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 F8VP50 259 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SMLR1H3BR10 107 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 FBP2O00757 339 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TRAFD1O14545 582 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MSI1O43347 362 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 EMC8O43402 210 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TSPAN2O60636 221 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 PRAF2O60831 178 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 NOL4O94818 638 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 GAS8-AS1O95177 125 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 LUC7L3O95232 432 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 ACSL3O95573 720 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 CPNE6O95741 557 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 DHFRP00374 187 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 PGK1P00558 417 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 CST4P01036 141 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 C9P02748 559 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 GIMD1P0DJR0 217 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SMIM10L1P0DMW3 83 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 FCGR1AP12314 374 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 EIF2S2P20042 333 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MSH3P20585 1137 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 HNRNPH3P31942 346 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MAS1LP35410 378 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 CD79BP40259 229 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TNFRSF4P43489 277 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 GPR12P47775 334 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 OR3A1P47881 315 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MMP15P51511 669 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 ART1P52961 327 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 GAS1P54826 345 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MTCP1P56278 107 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 ATP6V0D1P61421 351 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 PPIAP62937 165 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 DLK1P80370 383 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MRPS34P82930 218 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 CRYZQ08257 329 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 PJVKQ0ZLH3 352 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 BST2Q10589 180 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 EFNB3Q15768 340 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 ACKR1Q16570 336 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 CCDC58Q4VC31 144 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 BTNL8Q6UX41 500 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SIGLEC15Q6ZMC9 328 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC16A12Q6ZSM3 486 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 RNF144BQ7Z419 303 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TBC1D26Q86UD7 250 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 IGFN1Q86VF2 1251 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 ZC3HC1Q86WB0 502 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MEX3DQ86XN8 651 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 APCDD1Q8J025 514 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 PAQR4Q8N4S7 273 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MAB21L3Q8N8X9 362 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 CCDC112Q8NEF3 446 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 OR8K1Q8NGG5 319 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 OR14L1PQ8NHC6 308 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 ACTL9Q8TC94 416 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SPRYD4Q8WW59 207 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SMPDL3BQ92485 455 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 GGHQ92820 318 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 GLYATL1Q969I3 302 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 WBP2Q969T9 261 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TMEM143Q96AN5 459 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SMIM10Q96HG1 83 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SENP5Q96HI0 755 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 CCDC42Q96M95 316 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SEPHS2Q99611 448 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 C17orf62Q9BQA9 187 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 APOL2Q9BQE5 337 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TM6SF1Q9BZW5 370 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 SRRQ9GZT4 340 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 FAM107BQ9H098 131 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 TPK1Q9H3S4 243 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 LPAR2Q9HBW0 351 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 MCCC2Q9HCC0 563 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 CHMP1AQ9HD42 196 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 Q9N2J8 555 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 ENTPD7Q9NQZ7 604 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 DYRK4Q9NR20 520 aa4.39□□□□□ -1.71
CCDC88A-210ENST00000468534 ABCB10Q9NRK6 738 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms