RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 DPH7Q9BTV6 452 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 SPATA5L1Q9BVQ7 753 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 SRMSQ9H3Y6 488 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 SERHLQ9NQF3 203 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 TREM2Q9NZC2 230 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 IKZF3Q9UKT9 509 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 TSPAN11A1L157 253 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 FFAR2O15552 330 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 CISD3P0C7P0 127 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 UROSP10746 265 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 PTGFRP43088 359 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 DIO1P49895 249 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 BLOC1S1P78537 153 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 PDZK1IP1Q13113 114 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 PWP1Q13610 501 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 PPM1JQ5JR12 505 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 CLEC9AQ6UXN8 241 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 RBMS3Q6XE24 437 aaKnown RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 SPATA19Q7Z5L4 167 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 OR2T35Q8NGX2 323 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 OR5K1Q8NHB7 308 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 SCARB1Q8WTV0 552 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 KLK6Q92876 244 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 POP5Q969H6 163 aaKnown RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 ASPNQ9BXN1 380 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 OR51E2Q9H255 320 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 IL26Q9NPH9 171 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 ZFP57Q9NU63 452 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 RBFOX1Q9NWB1 397 aaKnown RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 OR51B4Q9Y5P0 310 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 A0A087X0M5 115 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 A0A1B0GX30 115 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 SIX6O95475 246 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 IFNA10P01566 189 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 ZNF35P13682 527 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 P2RY2P41231 377 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 VSX2P58304 361 aaPredicted RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 SPDYE7PQ495Y7 208 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 SKA3Q8IX90 412 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 ETFBKMTQ8IXQ9 262 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 ZNF383Q8NA42 475 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 PHOSPHO1Q8TCT1 267 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 ST7LQ8TDW4 575 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 SETD7Q8WTS6 366 aaKnown RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 ELMOD3Q96FG2 381 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 GAL3ST4Q96RP7 486 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 DPY30Q9C005 99 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 FN3KQ9H479 309 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 DPEP2Q9H4A9 486 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 BTNL2Q9UIR0 455 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 MYO9BQ13459 2157 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 RBBP9O75884 186 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 SLC2A1P11166 492 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 ZNF25P17030 456 aaPredicted RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 TEAD1P28347 426 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 RPS19P39019 145 aaKnown RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 RPS14P62263 151 aaKnown RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 ACER2Q5QJU3 275 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 LAMTOR1Q6IAA8 161 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 HACD2Q6Y1H2 254 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 TFGQ92734 400 aaPredicted RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 ARRDC3Q96B67 414 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 CCDC74BQ96LY2 380 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 DPAGT1Q9H3H5 408 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 NT5DC2Q9H857 520 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 LTB4R2Q9NPC1 389 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 ZSCAN32Q9NX65 697 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 GOLT1BQ9Y3E0 138 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 LOC102723532A0A0G2JNH3 316 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 OR14I1A6ND48 311 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 RHCEP18577 417 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 RGS6P49758 472 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 FABP9Q0Z7S8 132 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 OLIG2Q13516 323 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 GTF2H2Q13888 395 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 TSTQ16762 297 aaKnown RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 TMEM196Q5HYL7 178 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 GTF2H2CQ6P1K8 395 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 PGBD2Q6P3X8 592 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 CFAP161Q6P656 301 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 GPR155Q7Z3F1 870 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 CUZD1Q86UP6 607 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 MDGA1Q8NFP4 955 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 GLYATL2Q8WU03 294 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 SCAMP4Q969E2 229 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 CHFRQ96EP1 664 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 TRMT61AQ96FX7 289 aaKnown RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 CXorf58Q96LI9 332 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 TOLLIPQ9H0E2 274 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 LEF1Q9UJU2 399 aaPredicted RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 COL4A6Q14031 1691 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 GSAPA4D1B5 854 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 FGF4P08620 206 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 PSMA1P25786 263 aaKnown RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 RYKP34925 604 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 KIR2DL3P43628 341 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 ACVR1Q04771 509 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 NAE1Q13564 534 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 EXOC3L2Q2M3D2 409 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 C9orf64Q5T6V5 341 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms