RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 IGHV3-20A0A0C4DH32 117 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 A8MUA0 341 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 A8MVJ9 347 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 PCDH17O14917 1159 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 RRP8O43159 456 aaKnown RBP12.47□□□□□ -0.41
LIMS1-204ENST00000409441 OR10H2O60403 315 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 TRMUO75648 421 aaKnown RBP12.47□□□□□ -0.41
LIMS1-204ENST00000409441 WT1P19544 449 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-204ENST00000409441 EEF1B2P24534 225 aaKnown RBP12.47□□□□□ -0.41
LIMS1-204ENST00000409441 STT3AP46977 705 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 MANFP55145 182 aaKnown RBP12.47□□□□□ -0.41
LIMS1-204ENST00000409441 DUSP2Q05923 314 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 IL10RAQ13651 578 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 TUBA3CQ13748 450 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 CEBPEQ15744 281 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 KIRREL2Q6UWL6 708 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 CPEB2Q7Z5Q1 589 aaKnown RBP12.47□□□□□ -0.41
LIMS1-204ENST00000409441 ARMC8Q8IUR7 673 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 PSMA8Q8TAA3 256 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 SPPL2AQ8TCT8 520 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 GEMIN6Q8WXD5 167 aaKnown RBP12.47□□□□□ -0.41
LIMS1-204ENST00000409441 DGAT2Q96PD7 388 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 DOK1Q99704 481 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 APOL4Q9BPW4 351 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 RUBCNLQ9H714 662 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 A4GALTQ9NPC4 353 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 KRT84Q9NSB2 600 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 KIF17Q9P2E2 1029 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 C19orf25Q9UFG5 118 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF451Q9Y4E5 1061 aa12.47□□□□□ -0.41
LIMS1-204ENST00000409441 LOC102723996A0A087X1L8 192 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 E9PQ18 207 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 SOCS6O14544 535 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 NKX2-8O15522 239 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 DNAJB5O75953 348 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 DIRAS1O95057 198 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 DCKP27707 260 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 AQP1P29972 269 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 NCBP2P52298 156 aaKnown RBP eCLIP12.46□□□□□ -0.41
LIMS1-204ENST00000409441 CXCR4P61073 352 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 PMS2P3Q13401 168 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 RAB39AQ14964 217 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 MEP1AQ16819 746 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 CTU2Q2VPK5 515 aaKnown RBP12.46□□□□□ -0.41
LIMS1-204ENST00000409441 REEP3Q6NUK4 255 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 DGAT2L6Q6ZPD8 337 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 CLVS1Q8IUQ0 354 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-204ENST00000409441 SPACA3Q8IXA5 215 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 LRRC25Q8N386 305 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-204ENST00000409441 OR5AK3PQ8NH89 298 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 RIT1Q92963 219 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 TAMM41Q96BW9 452 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 ISOC1Q96CN7 298 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 AMDHD1Q96NU7 426 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF300Q96RE9 604 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-204ENST00000409441 PITX2Q99697 317 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 BARD1Q99728 777 aaKnown RBP12.46□□□□□ -0.41
LIMS1-204ENST00000409441 ADNPQ9H2P0 1102 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 GLIPR2Q9H4G4 154 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 RIBC2Q9H4K1 309 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 CXorf21Q9HAI6 301 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 SLAMF7Q9NQ25 335 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 NDUFAF4Q9P032 175 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 RAXQ9Y2V3 346 aa12.46□□□□□ -0.41
LIMS1-204ENST00000409441 SYNDIG1LA6NDD5 238 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 M0QX08 132 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 TAF4O00268 1085 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 TNFRSF11BO00300 401 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 SLC1A7O00341 560 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 MITFO75030 526 aaPredicted RBP12.45□□□□□ -0.42
LIMS1-204ENST00000409441 ATP1B1P05026 303 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 IL7RP16871 459 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 NT5EP21589 574 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 NTSP30990 170 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 RRM2P31350 389 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 PTGER1P34995 402 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 YAP1P46937 504 aaKnown RBP12.45□□□□□ -0.42
LIMS1-204ENST00000409441 NUP107P57740 925 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 CDK5R2Q13319 367 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 ELAVL1Q15717 326 aaKnown RBP12.45□□□□□ -0.42
LIMS1-204ENST00000409441 RAB43Q86YS6 212 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 ATG16L2Q8NAA4 619 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 OR11G2Q8NGC1 345 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 OR13F1Q8NGS4 319 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 SUN3Q8TAQ9 357 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 ADAMTS17Q8TE56 1095 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 DOK4Q8TEW6 326 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 GIPC3Q8TF64 312 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 PTPMT1Q8WUK0 201 aaPredicted RBP12.45□□□□□ -0.42
LIMS1-204ENST00000409441 PSD2Q9BQI7 771 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 PELOQ9BRX2 385 aaKnown RBP12.45□□□□□ -0.42
LIMS1-204ENST00000409441 GABARAPL3Q9BY60 117 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 ADAP2Q9NPF8 381 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 TIMMDC1Q9NPL8 285 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 NDRG4Q9ULP0 352 aaKnown RBP12.45□□□□□ -0.42
LIMS1-204ENST00000409441 LYVE1Q9Y5Y7 322 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 CLCA3PQ9Y6N3 262 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 APC2O95996 2303 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 FREM2Q5SZK8 3169 aa12.45□□□□□ -0.42
LIMS1-204ENST00000409441 CDC14CA4D256 554 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms