RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 HEMK1Q9Y5R4 338 aaPredicted RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 A0A1W2PRG6 482 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 OR2W5A6NFC9 320 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 IDSB3KWA1 339 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 CD63P08962 238 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 HK1P19367 917 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 HOXC12P31275 282 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 SFTPDP35247 375 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 OR2B6P58173 313 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 CCL7P80098 99 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 ZXDAP98168 799 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 MXD1Q05195 221 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 MRPL2Q5T653 305 aaKnown RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 TRIQKQ629K1 86 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 TMEM71Q6P5X7 295 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 SPATC1Q76KD6 591 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 C19orf18Q8NEA5 215 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 OR51G2Q8NGK0 314 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 CDC6Q99741 560 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 PIGUQ9H490 435 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 PLGRKTQ9HBL7 147 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 MCCC2Q9HCC0 563 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 PCDHGB7Q9Y5F8 929 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 OR2A25A4D2G3 310 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 PATE3B3GLJ2 98 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 TRMUO75648 421 aaKnown RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 SLITRK5O94991 958 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 RPP14O95059 124 aaKnown RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 OXSR1O95747 527 aaPredicted RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 HPRP00739 348 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 PRKAR1AP10644 381 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 HOXB3P14651 431 aaPredicted RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 GPR3P46089 330 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 VLDLRP98155 873 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 IL18R1Q13478 541 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 PUM1Q14671 1186 aaKnown RBP eCLIP8.5□□□□□ -1.05
LIG4-202ENST00000405925 PTGES3Q15185 160 aaKnown RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 TIGD6Q17RP2 521 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 CRTC2Q53ET0 693 aaPredicted RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 PRAMEF17Q5VTA0 474 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 OR2AJ1Q8NGZ0 328 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 CCDC74BQ96LY2 380 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 DPH1Q9BZG8 443 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 NXT1Q9UKK6 140 aaKnown RBP8.5□□□□□ -1.05
LIG4-202ENST00000405925 CARD8Q9Y2G2 431 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 ANK1P16157 1881 aa8.5□□□□□ -1.05
LIG4-202ENST00000405925 SVILO95425 2214 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 IGHV1OR21-1A0A087WYE8 117 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 H0YAE9 185 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 FLRT2O43155 660 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 BTG2P78543 158 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 RUNX2Q13950 521 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 ANGPT1Q15389 498 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 SFTPA2Q8IWL1 248 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 UBE2J2Q8N2K1 259 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 LNX2Q8N448 690 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 OR14L1PQ8NHC6 308 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 MCFD2Q8NI22 146 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 TSLPQ969D9 159 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 TRNT1Q96Q11 434 aaKnown RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 FOLH1BQ9HBA9 442 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 HMG20AQ9NP66 347 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 RLIMQ9NVW2 624 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 TDRD6O60522 2096 aaKnown RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 ZNF99A8MXY4 864 aaPredicted RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 FXYD1O00168 92 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 ALOX12BO75342 701 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 MRPL3P09001 348 aaKnown RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 DCAF7P61962 342 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 ZSWIM7Q19AV6 140 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 C6orf141Q5SZD1 244 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 FBXO42Q6P3S6 717 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 ARL9Q6T311 187 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 IQCF1Q8N6M8 205 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 OR8J1Q8NGP2 316 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 FCGR1BQ92637 280 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 TMEM203Q969S6 136 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 COQ8BQ96D53 544 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 PRRC1Q96M27 445 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 AGPAT4Q9NRZ5 378 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 FAM118AQ9NWS6 357 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 SLC25A37Q9NYZ2 338 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 ZNF443Q9Y2A4 671 aaPredicted RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 SLC35A3Q9Y2D2 325 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 ZNF646O15015 1829 aaPredicted RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 IGHV5-51A0A0C4DH38 117 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 GXYLT2A0PJZ3 443 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 J3KTA2 159 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 PROM1O43490 865 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 GAB4Q2WGN9 574 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 PRAMEF20Q5VT98 475 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 TMEM236Q5W0B7 351 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 ZNF57Q68EA5 555 aaPredicted RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 OPN5Q6U736 354 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 KLHL36Q8N4N3 616 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 C9orf43Q8TAL5 461 aaPredicted RBP8.49□□□□□ -1.05
LIG4-202ENST00000405925 UFD1Q92890 307 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 FKBP10Q96AY3 582 aa8.49□□□□□ -1.05
LIG4-202ENST00000405925 LRR1Q96L50 414 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms