RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SELPLGQ14242 412 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 SLC25A25Q6KCM7 469 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 LSMEM1Q8N8F7 131 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 ADCY4Q8NFM4 1077 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 GFM2Q969S9 779 aaKnown RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 NODALQ96S42 347 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 SACM1LQ9NTJ5 587 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 DEPPQ9NTK1 212 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 DDX18Q9NVP1 670 aaKnown RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 P2RX2Q9UBL9 471 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 IFT52Q9Y366 437 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 SPTBP11277 2137 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 GXYLT2A0PJZ3 443 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 K7EM74 188 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 UGT2B11O75310 529 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 C1QL1O75973 258 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 OXSR1O95747 527 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 MAP2K6P52564 334 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 SKP2Q13309 424 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 ZNHIT3Q15649 155 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 NRF1Q16656 503 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 GTDC1Q4AE62 458 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 MTX3Q5HYI7 312 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 WDSUB1Q8N9V3 476 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 FAM156AQ8NDB6 213 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 PAPD5Q8NDF8 572 aaKnown RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 HIPK4Q8NE63 616 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 BCAS4Q8TDM0 211 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 GRHL3Q8TE85 626 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 THAP3Q8WTV1 239 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 SLC38A5Q8WUX1 472 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 TMCO6Q96DC7 493 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 PSD2Q9BQI7 771 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 UTP23Q9BRU9 249 aaKnown RBP6.42□□□□□ -1.38
LIMA1-202ENST00000394943 FUZQ9BT04 418 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 OR8D2Q9GZM6 311 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 LRMDAQ9H2I8 198 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 FANCFQ9NPI8 374 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 TIMMDC1Q9NPL8 285 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 UBQLN4Q9NRR5 601 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 EXD2Q9NVH0 621 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 ICAM5Q9UMF0 924 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 SLC35A3Q9Y2D2 325 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 L3MBTL1Q9Y468 752 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 KNL1Q8NG31 2342 aa6.42□□□□□ -1.38
LIMA1-202ENST00000394943 NME4O00746 187 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 SUV39H1O43463 412 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 STX11O75558 287 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 MFN2O95140 757 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 PABPC4LP0CB38 370 aaKnown RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 GGT1P19440 569 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 NCF2P19878 526 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ELAVL4P26378 380 aaKnown RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 EVI2BP34910 448 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 CYB561P49447 251 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 DECR1Q16698 335 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 C6orf10Q5SRN2 563 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF440Q8IYI8 595 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ZADH2Q8N4Q0 377 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 OR2M7Q8NG81 312 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 CDS1Q92903 461 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ZBTB9Q96C00 473 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ADAM19Q9H013 955 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF703Q9H7S9 590 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ZBTB20Q9HC78 741 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 PCDHGB4Q9UN71 923 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 TP53TG5Q9Y2B4 290 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 WIF1Q9Y5W5 379 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 RIF1Q5UIP0 2472 aaKnown RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 TCRBV5S2A0A599 114 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ANKUB1A6NFN9 424 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 PRAMEF25A6NGN4 478 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 TP53I11O14683 189 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ANGPT2O15123 496 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 SUSD5O60279 629 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 UTS2O95399 124 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 CHMP24386 653 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ELK4P28324 431 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 MAGEA2P43356 314 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 GFRA1P56159 465 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 CORO7P57737 925 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 OR1C1Q15619 314 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 VMACQ2NL98 169 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ABHD17BQ5VST6 288 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 SLC6A19Q695T7 634 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 C16orf89Q6UX73 402 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 RNF130Q86XS8 419 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 SLC44A2Q8IWA5 706 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 PSD4Q8NDX1 1056 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 OR2M3Q8NG83 312 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 RCN3Q96D15 328 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 CRELD1Q96HD1 420 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF426Q9BUY5 554 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 PINK1Q9BXM7 581 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 PIF1Q9H611 641 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 B3GNT3Q9Y2A9 372 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ACOT8O14734 319 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 DBIP07108 87 aaKnown RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 FKBP2P26885 142 aaKnown RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 GCNT6Q5T4J0 391 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms