RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 GNG13Q9P2W3 67 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 CAMTA1Q9Y6Y1 1673 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ANKRD34BA5PLL1 514 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ETFAP13804 333 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 RUNX3Q13761 415 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 GRIN2CQ14957 1233 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ANKRD54Q6NXT1 300 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 TRAV18A0A075B6X5 111 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 RTCAO00442 366 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 CASC3O15234 703 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 SERPINA7P05543 415 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 HLCSP50747 726 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ARG2P78540 354 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 TAP2Q03519 686 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 PON2Q15165 354 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 DPY19L2P1Q6NXN4 242 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 RSC1A1Q92681 617 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 SNX18Q96RF0 628 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ST6GALNAC5Q9BVH7 336 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ALG8Q9BVK2 526 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 ARHGAP39Q9C0H5 1083 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 POT1Q9NUX5 634 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC7A7Q9UM01 511 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 STYXL1Q9Y6J8 313 aa12.12□□□□□ -0.47
CCDC88C-204ENST00000389857 BCAS1O75363 584 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 KIAA1211LQ6NV74 962 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 ZFP41Q8N8Y5 198 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 OR51Q1Q8NH59 317 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF417Q8TAU3 575 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 ADAMTS19Q8TE59 1207 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 TAAR8Q969N4 342 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 ZFYVE21Q9BQ24 234 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 PREBQ9HCU5 417 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 SIX4Q9UIU6 781 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 CD300LBA8K4G0 201 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 SGSHP51688 502 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 MPP7Q5T2T1 576 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 NCCRP1Q6ZVX7 275 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 USP53Q70EK8 1073 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 TPRA1Q86W33 373 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 NRMQ8IXM6 262 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 GLIS1Q8NBF1 620 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 OR10T2Q8NGX3 314 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 HCAR1Q9BXC0 346 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 VRTNQ9H8Y1 702 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 BLACEA4D250 179 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 SULT1C2O00338 296 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 MRPS14O60783 128 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 STC2O76061 302 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 AKAIN1P0CW23 69 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 MYF6P23409 242 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 CCBE1Q6UXH8 406 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 OR4N5Q8IXE1 308 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 FAM83FQ8NEG4 500 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 NLGN4YQ8NFZ3 816 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 FRZBQ92765 325 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF840PA6NDX5 716 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 UGDHO60701 494 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 PTTG1O95997 202 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 PTHP01270 115 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 AQP2P41181 271 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 CX3CR1P49238 355 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 FAM69AQ5T7M9 428 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 KDELC1Q6UW63 502 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF696Q9H7X3 374 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 EVA1AQ9H8M9 152 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 GCM1Q9NP62 436 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 ACAD8Q9UKU7 415 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 PCDHB10Q9UN67 800 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 PROS1P07225 676 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 PPP5CP53041 499 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 GLO1Q04760 184 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 MEF2DQ14814 521 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 OR4D1Q15615 310 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 SFXN2Q96NB2 322 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 MED1Q15648 1581 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 RFPL2O75678 378 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 DSC1Q08554 894 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 GPR50Q13585 617 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 AGAP7PQ5VUJ5 663 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 AGAP6Q5VW22 663 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 CLEC1AQ8NC01 280 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 OR5D14Q8NGL3 314 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 OR4K15Q8NH41 348 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 PLEKHO2Q8TD55 490 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 AGAP4Q96P64 663 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC35A3Q9Y2D2 325 aa12.11□□□□□ -0.47
CCDC88C-204ENST00000389857 BAZ2AQ9UIF9 1905 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC35E2BP0CK96 405 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 LCN8Q6JVE9 175 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 RDH10Q8IZV5 341 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SLC5A8Q8N695 610 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SORCS1Q8WY21 1168 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SAMD8Q96LT4 415 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 SLA2Q9H6Q3 261 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 RPH3AQ9Y2J0 694 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 DLG5Q8TDM6 1919 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 PLSCR5A0PG75 271 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 TFP02787 698 aa12.1□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF888P0CJ79 500 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms