RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PSMA8Q8TAA3 256 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 GEMIN6Q8WXD5 167 aaKnown RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 PTCHD1Q96NR3 888 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 ZNF300Q96RE9 604 aaPredicted RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 TUBA1CQ9BQE3 449 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 REPIN1Q9BWE0 567 aaKnown RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 ZNF700Q9H0M5 742 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 PRORYQ9H606 182 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 CXorf21Q9HAI6 301 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 A4GALTQ9NPC4 353 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 SIRT3Q9NTG7 399 aaPredicted RBP9.48□□□□□ -0.89
VPS53-202ENST00000389040 LYVE1Q9Y5Y7 322 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 HS3ST3B1Q9Y662 390 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 HSPE1-MOB4S4R3N1 261 aa9.48□□□□□ -0.89
VPS53-202ENST00000389040 SEC16AO15027 2179 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 APC2O95996 2303 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 A0A1W2PR48 441 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 C5orf58C9J3I9 102 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 TNFRSF11BO00300 401 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 SLC1A7O00341 560 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 SOCS6O14544 535 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 NKX2-8O15522 239 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 DYRK3O43781 588 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 B4GALT2O60909 372 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 TRMUO75648 421 aaKnown RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 GPR75O95800 540 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 HPP00738 406 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 PCSK6P29122 969 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 OR1E2P47887 323 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 IGLV3-21P80748 117 aaPredicted RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 STX4Q12846 297 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 AIMP2Q13155 320 aaKnown RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 SLC13A2Q13183 592 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 DYNC1I2Q13409 638 aaKnown RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 IL10RAQ13651 578 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 EXT1Q16394 746 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 MFSD4BQ5TF39 518 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 TNFAIP8L2Q6P589 184 aaPredicted RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 KIRREL2Q6UWL6 708 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 C6orf120Q7Z4R8 191 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 CPEB2Q7Z5Q1 589 aaKnown RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 PPP1R32Q7Z5V6 425 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 ARMC8Q8IUR7 673 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 HORMAD2Q8N7B1 307 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 ZNF420Q8TAQ5 688 aaPredicted RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 SLC38A5Q8WUX1 472 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 APOBEC4Q8WW27 367 aaKnown RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 UCN3Q969E3 161 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 ISOC1Q96CN7 298 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 APOL4Q9BPW4 351 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 EXD2Q9NVH0 621 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 P4HTMQ9NXG6 502 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 FBXW2Q9UKT8 454 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 TESMINQ9Y4I5 508 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 GMPPBQ9Y5P6 360 aa9.47□□□□□ -0.89
VPS53-202ENST00000389040 MRPS18BQ9Y676 258 aaKnown RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 MDC1Q14676 2089 aaKnown RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 URB1O60287 2271 aaKnown RBP9.47□□□□□ -0.89
VPS53-202ENST00000389040 PRAMEF25A6NGN4 478 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 DNAJB6O75190 326 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 TFPTP0C1Z6 253 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 CCDC159P0C7I6 412 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 SFTPCP11686 197 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 JUNBP17275 347 aaPredicted RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 WT1P19544 449 aaPredicted RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 DCKP27707 260 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 OTX2P32243 289 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 CCT3P49368 545 aaKnown RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 RPS18P62269 152 aaKnown RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 SPIBQ01892 262 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 CDK5R2Q13319 367 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 XAF1Q6GPH4 301 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 JMJD6Q6NYC1 403 aaPredicted RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 SLC48A1Q6P1K1 146 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 ERI1Q8IV48 349 aaKnown RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 SMYD1Q8NB12 490 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 CLEC1AQ8NC01 280 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 OR11G2Q8NGC1 345 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 OR4C15Q8NGM1 316 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 CNIH3Q8TBE1 160 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 DAZLQ92904 295 aaKnown RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 ZNF566Q969W8 418 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 WBP1Q96G27 269 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 RBM18Q96H35 190 aaKnown RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 AMDHD1Q96NU7 426 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 LPAR4Q99677 370 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 GABARAPL3Q9BY60 117 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 ADAP2Q9NPF8 381 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 ATP13A2Q9NQ11 1180 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 SLC35C2Q9NQQ7 365 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 TUBD1Q9UJT1 453 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 NDRG4Q9ULP0 352 aaKnown RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 PPIEQ9UNP9 301 aaKnown RBP9.46□□□□□ -0.89
VPS53-202ENST00000389040 ACACAQ13085 2346 aa9.46□□□□□ -0.89
VPS53-202ENST00000389040 IGHV1-45A0A0A0MS14 117 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 NSG1A0A0A6YYJ2 146 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 CDC14CA4D256 554 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 FAM227AF5H4B4 570 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 ACACBO00763 2458 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 DNAJB5O75953 348 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms