RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 NEDD8Q15843 81 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 HKDC1Q2TB90 917 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 CTU2Q2VPK5 515 aaKnown RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 LRRC23Q53EV4 343 aaPredicted RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 AWAT1Q58HT5 328 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 KDM4DQ6B0I6 523 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 PLAG1Q6DJT9 500 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 XAF1Q6GPH4 301 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 LAIR2Q6ISS4 152 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 FAHD1Q6P587 224 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 FBXO46Q6PJ61 603 aaPredicted RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 LCTLQ6UWM7 567 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 ZNF621Q6ZSS3 439 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 IKBIPQ70UQ0 350 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 ARHGAP22Q7Z5H3 698 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 R3HCC1LQ7Z5L2 792 aaKnown RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 TMPRSS11BQ86T26 416 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 HORMAD1Q86X24 394 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 CROCCP3Q8IVE0 287 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 CLECL1Q8IZS7 167 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 HS3ST5Q8IZT8 346 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 RNF175Q8N4F7 328 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 C1orf52Q8N6N3 182 aaKnown RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 NKAIN3Q8N8D7 197 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 OR9A1PQ8NGU1 263 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 HUS1BQ8NHY5 278 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 SETD7Q8WTS6 366 aaKnown RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 RAB2BQ8WUD1 216 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 SLC5A11Q8WWX8 675 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 OR8D1Q8WZ84 308 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 LZICQ8WZA0 190 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 NEIL2Q969S2 332 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 UBE2E3Q969T4 207 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 MUL1Q969V5 352 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 RAB7BQ96AH8 199 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 ARRDC3Q96B67 414 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 SH3KBP1Q96B97 665 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 MTERF3Q96E29 417 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 MED8Q96G25 268 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 PPP1R16AQ96I34 528 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 LRRC3BQ96PB8 259 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 HIST1H2AAQ96QV6 131 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 SIGLEC11Q96RL6 698 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 MTERF1Q99551 399 aaKnown RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 PITX2Q99697 317 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 RAD21L1Q9H4I0 556 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 REEP4Q9H6H4 257 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 GPN2Q9H9Y4 310 aaPredicted RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 LIN28AQ9H9Z2 209 aaKnown RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 PLGRKTQ9HBL7 147 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 MYNNQ9NPC7 610 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 NECTIN3Q9NQS3 549 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 ATAD3AQ9NVI7 634 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 VNN3Q9NY84 501 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 CIDEBQ9UHD4 219 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 VPS4AQ9UN37 437 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 ABCG2Q9UNQ0 655 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 GPR34Q9UPC5 381 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 ITM2BQ9Y287 266 aa4.5□□□□□ -1.69
USP48-202ENST00000374730 WBP11Q9Y2W2 641 aaKnown RBP4.5□□□□□ -1.69
USP48-202ENST00000374730 A0A087X0M5 115 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 LY6G6EA0A0G2JKS1 128 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 A0A1B0GVG6 124 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 A0A1B0GX30 115 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 GNG14A0A1W2PPG7 69 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 LINC01553A4QN01 128 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 GABRR3A8MPY1 467 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 B4GAT1O43505 415 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 PI15O43692 258 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 TBX19O60806 448 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 JRKO75564 520 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 ANGPTL1O95841 491 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 ANXA2P07355 339 aaKnown RBP4.49□□□□□ -1.69
USP48-202ENST00000374730 C1GALT1C1LP0DN25 315 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 ADRB3P13945 408 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 NPPBP16860 134 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 ZNF8P17098 575 aaPredicted RBP4.49□□□□□ -1.69
USP48-202ENST00000374730 CCNA2P20248 432 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 PCMT1P22061 227 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 EEF1B2P24534 225 aaKnown RBP4.49□□□□□ -1.69
USP48-202ENST00000374730 ACADLP28330 430 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 TEAD1P28347 426 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 PDHA2P29803 388 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 PBLDP30039 288 aaPredicted RBP4.49□□□□□ -1.69
USP48-202ENST00000374730 SERPINB1P30740 379 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 POLR2IP36954 125 aaKnown RBP4.49□□□□□ -1.69
USP48-202ENST00000374730 GPR1P46091 355 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 YAP1P46937 504 aaKnown RBP4.49□□□□□ -1.69
USP48-202ENST00000374730 DAPP51397 102 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 MVDP53602 400 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 CRYBA2P53672 197 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 PHEXP78562 749 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 VLDLRP98155 873 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 ID2Q02363 134 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 FADDQ13158 208 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 CAMK1Q14012 370 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 ARHGAP19Q14CB8 494 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 MFSD13AQ14CX5 517 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 PDGFRLQ15198 375 aa4.49□□□□□ -1.69
USP48-202ENST00000374730 RBMS2Q15434 407 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms