RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 POFUT2Q9Y2G5 429 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 CFAP54Q96N23 3096 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 TRIM64CA6NLI5 447 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 A8MUA0 341 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 D6RAR5 112 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 FAAHO00519 579 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 PRKNO60260 465 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 GDF9O60383 454 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 NTN1O95631 604 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 THY1P04216 161 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 NID1P14543 1247 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF136P52737 540 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 BIKQ13323 160 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 LARS2Q15031 903 aaKnown RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 C6orf141Q5SZD1 244 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 PODNL1Q6PEZ8 512 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 KLHL17Q6TDP4 642 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 DBX2Q6ZNG2 339 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 SATL1Q86VE3 508 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 MORN4Q8NDC4 146 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 CNIH3Q8TBE1 160 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 SGCDQ92629 289 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 ATOH1Q92858 354 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 UBE2FQ969M7 185 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 HRASLS5Q96KN8 279 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 GFM1Q96RP9 751 aaKnown RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 FNDC11Q9BVV2 318 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 VN1R1Q9GZP7 353 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 OCIAD1Q9NX40 245 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 GMPPBQ9Y5P6 360 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 R4GN57 208 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 LNP1A1A4G5 178 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 CPSF4LA6NMK7 179 aaKnown RBP12.77□□□□□ -0.37
PTPRF-202ENST00000372405 DDAH2O95865 285 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 IGKV3-11P04433 115 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 DBIP07108 87 aaKnown RBP12.77□□□□□ -0.37
PTPRF-202ENST00000372405 PRG2P13727 222 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 TNNI3P19429 210 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 RFX3P48380 749 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 TPD52P55327 224 aaPredicted RBP12.77□□□□□ -0.37
PTPRF-202ENST00000372405 SLC37A1P57057 533 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 ZNHIT3Q15649 155 aaPredicted RBP12.77□□□□□ -0.37
PTPRF-202ENST00000372405 PLA2G2CQ5R387 149 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 MRPL2Q5T653 305 aaKnown RBP12.77□□□□□ -0.37
PTPRF-202ENST00000372405 PHF19Q5T6S3 580 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 PGBD2Q6P3X8 592 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 NLGN4XQ8N0W4 816 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 AMER2Q8N7J2 671 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 YTHDF1Q9BYJ9 559 aaKnown RBP12.77□□□□□ -0.37
PTPRF-202ENST00000372405 MKKSQ9NPJ1 570 aaPredicted RBP12.77□□□□□ -0.37
PTPRF-202ENST00000372405 POLE3Q9NRF9 147 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 SEMA4GQ9NTN9 838 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 SLC13A4Q9UKG4 626 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 TMCC3Q9ULS5 477 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF232Q9UNY5 417 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 PCDHGA6Q9Y5G7 932 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 KIF26BQ2KJY2 2108 aa12.77□□□□□ -0.37
PTPRF-202ENST00000372405 CDHR4A6H8M9 788 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 SCRG1O75711 98 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 CRHBPP24387 322 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 RORAP35398 523 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 RPL5P46777 297 aaKnown RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 RGS8P57771 180 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 SMIM11AP58511 58 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 IL5RAQ01344 420 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 CDK5R2Q13319 367 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 FLYWCH1Q4VC44 716 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 LIN52Q52LA3 116 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ENTPD8Q5MY95 495 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF385CQ66K41 422 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 SHISA6Q6ZSJ9 500 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 PARP8Q8N3A8 854 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ADAMTS16Q8TE57 1224 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF721Q8TF20 911 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 HDAC2Q92769 488 aaKnown RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 LOXL4Q96JB6 756 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 LMF1Q96S06 567 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 KLHL28Q9NXS3 571 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 REV1Q9UBZ9 1251 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 RARRES3Q9UL19 164 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 MKL2Q9ULH7 1088 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 IGLV3-12A0A075B6K2 115 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 KHNYNO15037 678 aaKnown RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 OR10H3O60404 316 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 SOX30O94993 753 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 OXSR1O95747 527 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ADAP00813 363 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 GUSBP08236 651 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF883P0CG24 379 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 GSSP48637 474 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 HLCSP50747 726 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 DUSP3P51452 185 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 TAS2R41P59536 307 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ZFP36L1Q07352 338 aaKnown RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ELAVL1Q15717 326 aaKnown RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 NSDHLQ15738 373 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 NADK2Q4G0N4 442 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 LANCL3Q6ZV70 420 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 OR7G1Q8NGA0 311 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 OR4K5Q8NGD3 323 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms