RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 UGT2B7P16662 529 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 CD6P30203 668 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 MMP12P39900 470 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 RRAS2P62070 204 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 ESCO2Q56NI9 601 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 MANEALQ5VSG8 457 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 OR4C11Q6IEV9 310 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 ASPGQ86U10 573 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 FUNDC1Q8IVP5 155 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF709Q8N972 641 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC35B4Q969S0 331 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 MTHFD2LQ9H903 347 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 A0A0A6YYH2 397 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF840PA6NDX5 716 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 A6NJ64 397 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 GIPRP48546 466 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 MFSD13AQ14CX5 517 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 OR2T4Q8NH00 348 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF334Q9HCZ1 680 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 EVA1BQ9NVM1 165 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 GLTPQ9NZD2 209 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 KLRF1Q9NZS2 232 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 Q9Y3F1 56 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 MEIS3P2A8K0S8 358 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 IDUAP35475 653 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 COL9A2Q14055 689 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 SYT6Q5T7P8 510 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 DPY19L2P1Q6NXN4 242 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 IL20RBQ6UXL0 311 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 TAS2R16Q9NYV7 291 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 COPS3Q9UNS2 423 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 SGCEO43556 437 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 PRAMEF2O60811 474 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 TYRP1P17643 537 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 PIGAP37287 484 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 MAMDC4Q6UXC1 1216 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 G6PC3Q9BUM1 346 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC6A16Q9GZN6 736 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC25A18Q9H1K4 315 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 APMAPQ9HDC9 416 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 A0A1W2PPL8 197 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 TXNL1O43396 289 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 IFNA5P01569 189 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 OR5B12Q96R08 314 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 GPR62Q9BZJ7 368 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 UGDHO60701 494 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 NUDT7P0C024 238 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 ARSBP15848 533 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 MLLT3P42568 568 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 LEG1Q6P5S2 330 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 PXKQ7Z7A4 578 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 BRIX1Q8TDN6 353 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 MED30Q96HR3 178 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 ELOVL2Q9NXB9 296 aa18.46■□□□□ 0.55
CCDC88B-202ENST00000356786 BTAF1O14981 1849 aa18.46■□□□□ 0.54
CCDC88B-202ENST00000356786 MYH14Q7Z406 1995 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 TEX51A0A1B0GUA7 166 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 METTL15A6NJ78 407 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 FAM183AA6NL82 134 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 SIM1P81133 766 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 DYRK1AQ13627 763 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 TMEM35AQ53FP2 167 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 BEND4Q6ZU67 534 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 RCE1Q9Y256 329 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 FAM171A2A8MVW0 826 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 RAP2BP61225 183 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 MFSD6LQ8IWD5 586 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 MDGA1Q8NFP4 955 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 IRF7Q92985 503 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 C11orf54Q9H0W9 315 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 NTN4Q9HB63 628 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 MEPEQ9NQ76 525 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 BABAM2Q9NXR7 383 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 IFNA17P01571 189 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 GALTP07902 379 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 CRTC1Q6UUV9 634 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 GPAT4Q86UL3 456 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 COMTD1Q86VU5 262 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 LACC1Q8IV20 430 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 KLHDC8AQ8IYD2 350 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 OR4K17Q8NGC6 315 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 CPPED1Q9BRF8 314 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 TIAM2Q8IVF5 1701 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 GPR39O43194 453 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 RAD51DO75771 328 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 THEGLP0DJG4 465 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 LIPAP38571 399 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 ADARB1P78563 741 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 MRPS10P82664 201 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 TMEM150AQ86TG1 271 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 APCDD1Q8J025 514 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 OR13C3Q8NGS6 347 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 BRF2Q9HAW0 419 aa18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 PRMT8Q9NR22 394 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-202ENST00000356786 EDN1P05305 212 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 AHRP35869 848 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC26A5P58743 744 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 C12orf40Q86WS4 652 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 OR4F15Q8NGB8 312 aa18.44■□□□□ 0.54
CCDC88B-202ENST00000356786 OR56B4Q8NH76 319 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms